View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10794_7 (Length: 442)
Name: NF10794_7
Description: NF10794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10794_7 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 120 - 428
Target Start/End: Original strand, 46639668 - 46639975
Alignment:
| Q |
120 |
tcaaattaaatttgaaacctttcatcaaagaaataaaaatggtaaaagacatttgaacatatgataggtagtttaatctagttgaatattcaagcaatag |
219 |
Q |
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| T |
46639668 |
tcaaattaaatttgaaacctttcatcaaagaaataaaaatggtaaaagacatttgaacatatgataggtagtttaatctagttgaatattcaagcaatat |
46639767 |
T |
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| Q |
220 |
aattagaaattttcaatatnnnnnnnnnnnnnnnnnnnnnnnnngtctaaccaaaatatacacattcttcattttctcaaagtataaaaatattataatc |
319 |
Q |
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| T |
46639768 |
aattagaaattttcaatataaaaacagaaaaagaatgcaaaaaagtctaaccaaaatatacacattcttcattt-ctcaaagtataaaaatattataatc |
46639866 |
T |
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| Q |
320 |
atgatcaaaagctgtatggatgtccgtttaaatgtccaactaaaccaatcactctattattattttataagagtaatgtcaatttgcagcacaacaaaca |
419 |
Q |
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| T |
46639867 |
atgatcaaaagctgtatggatgtccgtttaaatgtctaaccaaaccaatcactctattattattttataagagtaatgtcaatttgcagcacaacaaaca |
46639966 |
T |
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| Q |
420 |
ctaacttcc |
428 |
Q |
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||||||| |
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| T |
46639967 |
gaaacttcc |
46639975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 428
Target Start/End: Original strand, 46642217 - 46642270
Alignment:
| Q |
375 |
attattattttataagagtaatgtcaatttgcagcacaacaaacactaacttcc |
428 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46642217 |
attattattttataagagtaacgtcaatttgcagcacaacaaacactaacttcc |
46642270 |
T |
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