View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10794_8 (Length: 408)
Name: NF10794_8
Description: NF10794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10794_8 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 9e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 6089700 - 6089855
Alignment:
| Q |
22 |
gttggttagtaaaattagtaatgaaagaagaagaatcatagaaaggaagtaaagtttcatgaggttgttgattttgagccacaacaactctaagcttatc |
121 |
Q |
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| T |
6089700 |
gttggttagtaaaattagtaatgaaagaagaagaatcatagaaaggaagtaaagtttcatgaggttgttgattttgagccacaacaactctaagcttatc |
6089799 |
T |
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| Q |
122 |
tcttctactttgttgtgggacatggtaaccttcaaaaccctcatcactagccatag |
177 |
Q |
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| T |
6089800 |
tcttctactttgttgtgggacatggtaaccttcaaaaccctcatcactagccatag |
6089855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 264 - 408
Target Start/End: Original strand, 6089942 - 6090086
Alignment:
| Q |
264 |
ctttttatagatgaagctggattgaagtgatggaagtgacnnnnnnngaaagaaagaaggtataataattaatggtgatgttaagtttattattatgatg |
363 |
Q |
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| T |
6089942 |
ctttttatagatgaagctggattgaagtgatggaagtgacaaaaaaagaaagaaagaaggtataataattaatggtgatgttaagtttattattatgatg |
6090041 |
T |
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| Q |
364 |
acagaaaaaatttgatacgtcaaagtgattgagaatttgatgatg |
408 |
Q |
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| T |
6090042 |
acagcaaaaatttgatacgtcaaagtgattgagaatttgatgatg |
6090086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 4512351 - 4512424
Alignment:
| Q |
264 |
ctttttatagatgaagctggattgaagtgatggaagtgacnnnnnnngaaagaaagaaggtataataattaatg |
337 |
Q |
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| T |
4512351 |
ctttttatagatgaagctagattgaagtgatggaagtgacaaaaaaagaaagaaagaaggtataataattaatg |
4512424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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