View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10794_9 (Length: 388)

Name: NF10794_9
Description: NF10794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10794_9
NF10794_9
[»] chr1 (3 HSPs)
chr1 (88-232)||(3822760-3822904)
chr1 (197-230)||(2191281-2191314)
chr1 (287-365)||(5608313-5608391)
[»] chr5 (7 HSPs)
chr5 (91-232)||(15362608-15362749)
chr5 (83-175)||(34573180-34573272)
chr5 (92-229)||(36059391-36059528)
chr5 (88-232)||(30008091-30008235)
chr5 (88-175)||(29966563-29966650)
chr5 (287-365)||(8387073-8387151)
chr5 (287-351)||(20203952-20204016)
[»] chr8 (6 HSPs)
chr8 (284-365)||(8452165-8452246)
chr8 (267-354)||(479182-479269)
chr8 (267-365)||(7126195-7126293)
chr8 (267-365)||(40589814-40589912)
chr8 (240-268)||(8452249-8452277)
chr8 (267-351)||(43319143-43319227)
[»] chr2 (3 HSPs)
chr2 (82-175)||(4051541-4051634)
chr2 (267-365)||(39829044-39829142)
chr2 (271-365)||(87333-87427)
[»] chr3 (2 HSPs)
chr3 (83-175)||(2138432-2138524)
chr3 (88-179)||(35239561-35239652)
[»] chr4 (9 HSPs)
chr4 (267-365)||(56062974-56063072)
chr4 (287-365)||(55734002-55734080)
chr4 (82-171)||(50501950-50502039)
chr4 (267-351)||(49950295-49950379)
chr4 (287-365)||(26423279-26423357)
chr4 (287-365)||(28538901-28538979)
chr4 (267-349)||(51260659-51260741)
chr4 (270-351)||(2063747-2063828)
chr4 (272-356)||(28425172-28425256)
[»] chr7 (2 HSPs)
chr7 (267-345)||(3746221-3746299)
chr7 (287-365)||(16096331-16096409)


Alignment Details
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 3822760 - 3822904
Alignment:
Q  88 atgtttgtgcaagcggttaatttatcacttcagcggcacatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacggtgagaagtgcc 187  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||  || | ||| |||||||||||  || ||||||||||||||||||||  |    
T  3822760 atgtttgtgcaagcggttaatttatcacttcagcggcaaaaacccacgtttgagtaaaagttagcttttcaaatttttttaaatcacggtgagaagtatc 3822859  T
Q  188 taggtaagcgcaaaaggtgttccagccgtgattccaaacacacca 232  Q
    || | ||||||||||| |||||  ||| |||||||||||||||||    
T  3822860 taaggaagcgcaaaagatgttctggccatgattccaaacacacca 3822904  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 2191281 - 2191314
Alignment:
Q  197 gcaaaaggtgttccagccgtgattccaaacacac 230  Q
    ||||||||||||||||||||||||||||||||||    
T  2191281 gcaaaaggtgttccagccgtgattccaaacacac 2191314  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 5608313 - 5608391
Alignment:
Q  287 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    ||||||||||||||  ||| | |||| ||| |||  |||||||||||| ||||| ||||||||||||| || |||||||    
T  5608313 agtatttggaattcgcgtcagatacttttacatggatgtaggtggacagttggaaatgggcagcaggtcagcgtgatga 5608391  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 15362608 - 15362749
Alignment:
Q  91 tttgtgcaagcggttaatttatcacttcagcggcacatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacggtgagaagtgcctag 190  Q
    ||||||||||||||| |||||||| |||||||||| | |||||||||  ||||||||||| ||||| |||||||||||||||||| | | || ||||| |    
T  15362608 tttgtgcaagcggttgatttatcaattcagcggcaaaaacccacgtttgaggagaagctaccttttgaagcttctttaaatcacgttaaaaattgcctcg 15362707  T
Q  191 gtaagcgcaaaaggtgttccagccgtgattccaaacacacca 232  Q
    | | | | ||||||||||   ||||||| |||||||||||||    
T  15362708 ggacgtggaaaaggtgttttggccgtgaatccaaacacacca 15362749  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 34573272 - 34573180
Alignment:
Q  83 ataggatgtttgtgcaagcggttaatttatcacttcagcggcacatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacg 175  Q
    |||| |||||||||||||||||| |||||| | |||||||||| | |||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  34573272 atagcatgtttgtgcaagcggttgatttattaattcagcggcaaaaacccacgtttgaggagaagctatcttttgaagcttctttaaatcacg 34573180  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 36059528 - 36059391
Alignment:
Q  92 ttgtgcaagcggttaatttatcacttcagcggcacatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacggtgagaagtgcctagg 191  Q
    |||||||||||| | ||||||||||| ||| ||| | | |||||||| |||| |||||| |||||  ||||||||||||||| |||||||| ||||| ||    
T  36059528 ttgtgcaagcggatgatttatcacttgagcagcaaaaagccacgttggaggaaaagctaccttttggagcttctttaaatcatggtgagaaatgcctcgg 36059429  T
Q  192 taagcgcaaaaggtgttccagccgtgattccaaacaca 229  Q
     | | |||||||||||||  | ||||| ||||||||||    
T  36059428 gacgtgcaaaaggtgttcatgtcgtgaatccaaacaca 36059391  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 30008235 - 30008091
Alignment:
Q  88 atgtttgtgcaagcggttaatttatcacttcagcggcacatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacggtgagaagtgcc 187  Q
    |||||||||||||||||| |||||||| ||||| |  | | |||||||||  | ||||||||| ||||| |||||||||||||||||| | | || | ||    
T  30008235 atgtttgtgcaagcggttgatttatcaattcagtgataaaaacccacgtttgaagagaagctaccttttgaagcttctttaaatcacgttaaaaattacc 30008136  T
Q  188 taggtaagcgcaaaaggtgttccagccgtgattccaaacacacca 232  Q
    | || | | | ||||||||||   ||||||| |||||||||||||    
T  30008135 tcgggacgtggaaaaggtgttttggccgtgaatccaaacacacca 30008091  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 29966563 - 29966650
Alignment:
Q  88 atgtttgtgcaagcggttaatttatcacttcagcggcacatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacg 175  Q
    |||||||||||||||||| |||||||| ||||| |  | | |||||||||  | ||||||||| ||||| ||||||||||||||||||    
T  29966563 atgtttgtgcaagcggttgatttatcaattcagtgataaaaacccacgtttgaagagaagctaccttttgaagcttctttaaatcacg 29966650  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 8387073 - 8387151
Alignment:
Q  287 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    ||||||||||||||  |||  ||||| |||||||  ||||| || ||||||||| ||||||||||||| ||||||||||    
T  8387073 agtatttggaattcgcgtcaattacttttatatggatgtagatgcacaattggaaatgggcagcaggtcagtgtgatga 8387151  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 20203952 - 20204016
Alignment:
Q  287 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagca 351  Q
    ||||||||||||||  ||| |||||| ||||| |  |||||||||||| ||||| ||||||||||    
T  20203952 agtatttggaattcgcgtcagttacttttatacggatgtaggtggacatttggaaatgggcagca 20204016  T

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Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 8452246 - 8452165
Alignment:
Q  284 cgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    |||||||||| |||||| |||| |||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||    
T  8452246 cgtagtatttagaattcgtgtcagttactattatattgatgtaggtggacaattggatatgggcagcaggttagtgtgatga 8452165  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 354
Target Start/End: Complemental strand, 479269 - 479182
Alignment:
Q  267 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggt 354  Q
    ||||||||||||| || || |||||||||| ||| |||| | |||| ||| |||  | ||||||||||||||||||||||||||||||    
T  479269 acccgagctttgcttggcggagtatttggacttcgtgtcagctacttttacatggttctaggtggacaattggacatgggcagcaggt 479182  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 365
Target Start/End: Original strand, 7126195 - 7126293
Alignment:
Q  267 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    ||||||||||||| || || ||||||||||||||  | |  ||||| ||||||| |||||| ||||| ||||||| |||||| || || ||||||||||    
T  7126195 acccgagctttgcttggcgaagtatttggaattcgcgacatttacttttatatgggtgtagatggacgattggacgtgggcaacatgtcagtgtgatga 7126293  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 365
Target Start/End: Complemental strand, 40589912 - 40589814
Alignment:
Q  267 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    ||||||||||||| || || |||||||||||||   ||| | |||| ||| |||  |||||||||||||| ||| ||||||||||||| || |||||||    
T  40589912 acccgagctttgcttggcggagtatttggaatttgcgtcagatacttttacatggatgtaggtggacaataggaaatgggcagcaggtcagcgtgatga 40589814  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 8452277 - 8452249
Alignment:
Q  240 tacccaattgataaaaacaattcaggtac 268  Q
    |||||||||||||||||||||||||||||    
T  8452277 tacccaattgataaaaacaattcaggtac 8452249  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 43319227 - 43319143
Alignment:
Q  267 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagca 351  Q
    ||||||||||||| || || |||||||||| |||  ||| | |||| ||| |||  | |||||||||||||||||||||| ||||    
T  43319227 acccgagctttgcttggcggagtatttggacttcgcgtcagctacttttacatggttttaggtggacaattggacatgggaagca 43319143  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 4051634 - 4051541
Alignment:
Q  82 tataggatgtttgtgcaagcggttaatttatcacttcagcggcacatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacg 175  Q
    ||||| |||||||||||||||||| |||||||| |||||| ||| | |||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  4051634 tatagcatgtttgtgcaagcggttgatttatcaattcagctgcaaaaacccacgtttgaggagaagctaccttttgaagcttctttaaatcacg 4051541  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 365
Target Start/End: Complemental strand, 39829142 - 39829044
Alignment:
Q  267 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    |||| |||||||| || || |||||||||||||| |||| |||||| |||||||  ||||| ||||| |||||| ||||||| ||||| || |||||||    
T  39829142 acccaagctttgcttggcggagtatttggaattcgtgtcagttacttttatatggttgtagatggacgattggagatgggcaacaggtcagcgtgatga 39829044  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 365
Target Start/End: Original strand, 87333 - 87427
Alignment:
Q  271 gagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    ||||||||| || || ||||| ||||||||  ||| | |||| ||| |||  |||||||| ||| ||||| |||||||||||||||| |||||||    
T  87333 gagctttgcttggcggagtatatggaattcgcgtcagatacttttacatggatgtaggtgaacagttggaaatgggcagcaggttagcgtgatga 87427  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 2138524 - 2138432
Alignment:
Q  83 ataggatgtttgtgcaagcggttaatttatcacttcagcggcacatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacg 175  Q
    |||| ||||||||| |||||||| |||||||| |||||||||| | || ||||||  ||||||||||| ||||| || |||||||||||||||    
T  2138524 atagcatgtttgtgtaagcggtttatttatcaattcagcggcaaaaactcacgtttgaggagaagctatcttttgaaacttctttaaatcacg 2138432  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 35239561 - 35239652
Alignment:
Q  88 atgtttgtgcaagcggttaatttatcacttcagcggcacatacccacgttgaaggagaagctagcttttcaagcttctttaaatcacggtga 179  Q
    |||||||| ||||||||  | ||||||||| ||||||  | |||  ||||| |||||||| || ||||| ||||||||||||||||||||||    
T  35239561 atgtttgttcaagcggtggaattatcactttagcggccaaaacctgcgttggaggagaagttaccttttaaagcttctttaaatcacggtga 35239652  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 365
Target Start/End: Original strand, 56062974 - 56063072
Alignment:
Q  267 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    ||||||||||||| ||| | ||||||||||||||  ||| |||||| |||||||  ||||| |||||||||| | ||||||||||||| || |||||||    
T  56062974 acccgagctttgcttgaaggagtatttggaattcgcgtcagttacttttatatggatgtagatggacaattgaaaatgggcagcaggtcagcgtgatga 56063072  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 55734002 - 55734080
Alignment:
Q  287 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    ||||||||||||||  ||| ||| || |||||||  |||||||||||| ||||| ||||||||||||| || |||||||    
T  55734002 agtatttggaattcacgtcagttgcttttatatggatgtaggtggacagttggaaatgggcagcaggtcagcgtgatga 55734080  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 50502039 - 50501950
Alignment:
Q  82 tataggatgtttgtgcaagcggttaatttatcacttcagcggcacatacccacgttgaaggagaagctagcttttcaagcttctttaaat 171  Q
    ||||| |||||||||||||||||| |||||| | |||||| | | | |||||||||  |||| || ||| ||||| ||||||||||||||    
T  50502039 tatagtatgtttgtgcaagcggttgatttattaattcagcagtaaaaacccacgtttgaggaaaaactaccttttgaagcttctttaaat 50501950  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 351
Target Start/End: Original strand, 49950295 - 49950379
Alignment:
Q  267 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagca 351  Q
    ||||||||||||| ||||| ||||||||||||||  ||   ||||| ||| || | |||||||||||||||||| ||||| ||||    
T  49950295 acccgagctttgcttgacggagtatttggaattcgcgtgaattacttttacataaatgtaggtggacaattggaaatgggtagca 49950379  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 26423357 - 26423279
Alignment:
Q  287 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    ||||||||||||||  ||| |||||| |||||||  ||||| ||||| |||||| ||||||| || || ||||||||||    
T  26423357 agtatttggaattcgcgtcagttacttttatatggttgtagatggacgattggagatgggcaacatgtcagtgtgatga 26423279  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 28538979 - 28538901
Alignment:
Q  287 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    ||||||||||||||   || |||||| |||||||  ||||| |||||| ||||| ||||||||||||| || |||||||    
T  28538979 agtatttggaattcacatcagttacttttatatggatgtagatggacagttggaaatgggcagcaggtcagcgtgatga 28538901  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 51260741 - 51260659
Alignment:
Q  267 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcag 349  Q
    ||||||||||||| ||  | ||||||||||||||  ||  |||||| |||||||  ||||| |||||||||||| ||||||||    
T  51260741 acccgagctttgcttggaggagtatttggaattcgcgtaagttacttttatatggatgtagatggacaattggaaatgggcag 51260659  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 2063747 - 2063828
Alignment:
Q  270 cgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagca 351  Q
    |||||||||| ||| | ||||||||||||||  ||| | |||| |||||||  ||||||| |||||||| | ||||||||||    
T  2063747 cgagctttgcttgatggagtatttggaattcacgtcagctacttttatatggatgtaggtagacaattgaaaatgggcagca 2063828  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 28425172 - 28425256
Alignment:
Q  272 agctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggtta 356  Q
    |||||||| || || ||||||||||||||  ||| |||||| ||||||   ||||| ||||| |||||| ||||||| |||||||    
T  28425172 agctttgcttggcggagtatttggaattcgcgtcagttacttttatatagttgtagatggacgattggagatgggcaacaggtta 28425256  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 3746221 - 3746299
Alignment:
Q  267 acccgagctttgcctgacgtagtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgg 345  Q
    |||| |||||||| || || ||||||||||||||  ||| |||||| ||||||   |||||||||||||||||||||||    
T  3746221 accctagctttgcttggcggagtatttggaattcgcgtcagttacttttatattgttgtaggtggacaattggacatgg 3746299  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 16096331 - 16096409
Alignment:
Q  287 agtatttggaattcttgtctgttactattatatgagtgtaggtggacaattggacatgggcagcaggttagtgtgatga 365  Q
    |||||||||||||| || | |||||| |||||||  |||||||||||||||||| ||||  ||||||| || |||||||    
T  16096331 agtatttggaattcgtgccagttactgttatatggatgtaggtggacaattggaaatggatagcaggtcagcgtgatga 16096409  T

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