View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10794_low_2 (Length: 220)
Name: NF10794_low_2
Description: NF10794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10794_low_2 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 18557106 - 18556887
Alignment:
| Q |
1 |
catcacttctctctgaacttcatgtcagtttacccactattcctaccatctactgtgacaatctcggtgccacttatctcactgtcaatcccgtcttcca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18557106 |
catcacttctctctgaacttcatgttagtttacccactattcctaccatctactgtgacaatctcggtgccacttatctcactgtcaatcccctcttcca |
18557007 |
T |
|
| Q |
101 |
tagtcgcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaaagattcgggttcaacatgtttccactaaagatcagcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18557006 |
tagtcgcatgaagcacattgccatagatattcattttgtcagagatcatgtcagaaataaaaagattcgggttcaacatgtttccactaaagatcagcta |
18556907 |
T |
|
| Q |
201 |
gcagattgcctcaccaaacc |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18556906 |
gcagattgcctcaccaaacc |
18556887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24494886 - 24495105
Alignment:
| Q |
1 |
catcacttctctctgaacttcatgtcagtttacccactattcctaccatctactgtgacaatctcggtgccacttatctcactgtcaatcccgtcttcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494886 |
catcacttctctctgaacttcatgtcagtttacccactattcctaccatctactgtgacaatcttggtgccacttatctcactgtcaatcccgtcttcca |
24494985 |
T |
|
| Q |
101 |
tagtcgcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaaagattcgggttcaacatgtttccactaaagatcagcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
24494986 |
tagtcgcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaaagattcgggttcaacatgtttccactatagatcatcta |
24495085 |
T |
|
| Q |
201 |
gcagattgcctcaccaaacc |
220 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
24495086 |
tcagattgcctcaccaaacc |
24495105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 86351 - 86570
Alignment:
| Q |
1 |
catcacttctctctgaacttcatgtcagtttacccactattcctaccatctactgtgacaatctcggtgccacttatctcactgtcaatcccgtcttcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
86351 |
catcacttctctctgaacttcatgtcagtttaccaactattcctaccatctactgtgacaatctcggtgccacgtatctcactatcaatcccgtcttcca |
86450 |
T |
|
| Q |
101 |
tagtcgcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaaagattcgggttcaacatgtttccactaaagatcagcta |
200 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
86451 |
tagtcgcatgaagcatactgccatagatattcattttgttagagatcatgtcagaaataaaaagattcgggttcaacatgtttccactacagatcagcta |
86550 |
T |
|
| Q |
201 |
gcagattgcctcaccaaacc |
220 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
86551 |
acagattgcctcaccaaacc |
86570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University