View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10795_high_1 (Length: 410)
Name: NF10795_high_1
Description: NF10795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10795_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 2601642 - 2601243
Alignment:
| Q |
1 |
tctgaccaaggctatttttaagtgtctggtccgacttatacccgaaaacccacttaaaggcctatttcgctttaaatttaatatgattatatttgtgaca |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2601642 |
tctgaccaagactatttttaagtgtctggtccgacttatacccgaaaacccacttaaaggcctatttcgctttaaatttaatatgattatatttgtgaca |
2601543 |
T |
|
| Q |
101 |
aatagttaatttataagttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2601542 |
aatagttaatttataagttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatg |
2601443 |
T |
|
| Q |
201 |
gagattggcaattgttgggttcccttttttggtattactagtgattcctggtttcatgtatggaaggacttcgatgggattggctagaaaaattagggaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2601442 |
gagattggcaattgttgggttcccttttttggtattactagtgattcctggtttcatgtatggaaggacttcgatgggattggctagaaaaattagggaa |
2601343 |
T |
|
| Q |
301 |
gagtacaataaagccggtacaatagcagaacaaacaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccatagctgctttctctg |
400 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2601342 |
gagtacaataaagcaggtacaatagcagaacaagcaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccatagctgctttctctg |
2601243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 2574158 - 2573765
Alignment:
| Q |
15 |
tttttaagtgtctggtccgacttatacccgaaaacccacttaaaggcctatttcgctttaaatttaatatgattatatttgtgaca------aatagtta |
108 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||| || ||||||| || |||||| | |||||||| |||||||||||| | ||||| |||||||| |
|
|
| T |
2574158 |
tttttaagtgtctgacctgacttatgcccgaaagcctacttaaaagcttatttcacattaaatttcatatgattatatatatgacattaacaaatagtta |
2574059 |
T |
|
| Q |
109 |
attt---ataagttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagat |
205 |
Q |
| |
|
|||| |||| |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2574058 |
atttcttataatttgaaacttacgtaggttccaaattttttgatgaatgcatctatgttccttggaagctacatagcagcatttgcattgttatggagat |
2573959 |
T |
|
| Q |
206 |
tggcaattgttgggttcccttttttggtattactagtgattcctggtttcatgtatggaaggacttcgatgggattggctagaaaaattagggaagagta |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2573958 |
tggcaattgttgggttcccttttttggtactactagtgattcctggtttcatgtatggaagaatttcgatgggattggctagaaaaattagagaagagta |
2573859 |
T |
|
| Q |
306 |
caataaagccggtacaatagcagaacaaacaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccatagctgctttctct |
399 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
2573858 |
caataaagccggtacaatagcacaacaagcaatatcttcaatcagaactgtttattcctttgcaggagaaagcaaaaccatagctgctttctct |
2573765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 121 - 399
Target Start/End: Complemental strand, 2678521 - 2678243
Alignment:
| Q |
121 |
aaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttgggt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
2678521 |
aaaattatataggttccaaattttttgatgaatgcatctatgttcattggaagctacatagtggcatttgcattgttatggagattagcaattgttgggt |
2678422 |
T |
|
| Q |
221 |
tcccttttttggtattactagtgattcctggtttcatgtatggaaggacttcgatgggattggctagaaaaattagggaagagtacaataaagccggtac |
320 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||| || |||||||||||| |||||||||| |
|
|
| T |
2678421 |
tcccttttgtggtactacttgtgattcctggtttcatgtatgggagaactttgatgggattggctagaaaaatgagagaagagtacaatcaagccggtac |
2678322 |
T |
|
| Q |
321 |
aatagcagaacaaacaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccatagctgctttctct |
399 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
2678321 |
aatagcagaacaagcaatatcttcaattagaactgtttattcctttgcaggagaaagcaaaaccatagctgctttctct |
2678243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 118 - 399
Target Start/End: Original strand, 2618861 - 2619142
Alignment:
| Q |
118 |
ttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttg |
217 |
Q |
| |
|
||||||| || ||||||||| |||||| |||||||| ||||| ||| ||||| | ||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
2618861 |
ttgaaaactacataggttccgaattttgtgatgaatacatctattttctttggaggatacatagtggcatttgcattgttatggagattggcaattgttg |
2618960 |
T |
|
| Q |
218 |
ggttcccttttttggtattactagtgattcctggtttcatgtatggaaggacttcgatgggattggctagaaaaattagggaagagtacaataaagccgg |
317 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||||||||| || |
|
|
| T |
2618961 |
ggttcccttttgtggtactacttgtgattcctggtttcatgtatggaagaactatgatgggattggctagaaaaatgagagaagagtacaataaagcagg |
2619060 |
T |
|
| Q |
318 |
tacaatagcagaacaaacaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccatagctgctttctct |
399 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
2619061 |
tacaatagcagaacaagcaatatcttcaattagaactgtttattcctttgcaggagaaagcaaaaccatagctgctttctct |
2619142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 118 - 398
Target Start/End: Complemental strand, 2646306 - 2646026
Alignment:
| Q |
118 |
ttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttg |
217 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||||| ||||||||| |||||||||| |||| ||||||| ||| |||||||||||||||||||| | |
|
|
| T |
2646306 |
ttgaaaactatgtaggttccaaatttgttgatgaatgcatctatgttcattggaagctatatagtagcatttacattattatggagattggcaattgtag |
2646207 |
T |
|
| Q |
218 |
ggttcccttttttggtattactagtgattcctggtttcatgtatggaaggacttcgatgggattggctagaaaaattagggaagagtacaataaagccgg |
317 |
Q |
| |
|
||||||||||| | || |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||| ||| || |
|
|
| T |
2646206 |
ggttcccttttattgttctacttgtgattcctggtttcatgtatcgaaggacatcgatgggattggctagaaaaattagtgaagagtataatcgagctgg |
2646107 |
T |
|
| Q |
318 |
tacaatagcagaacaaacaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccatagctgctttctc |
398 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2646106 |
tacaatagcagaacaagcaatatcttcaatcagaactgtttattcctttacaggagaaaacaaaaccatagctgctttctc |
2646026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 118 - 400
Target Start/End: Original strand, 2585170 - 2585452
Alignment:
| Q |
118 |
ttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttg |
217 |
Q |
| |
|
||||||| || ||||||||| |||||||||||||| |||| ||| ||||| | ||||||| |||||||| | |||||||||||| |||||||||| |
|
|
| T |
2585170 |
ttgaaaactacataggttccggattttttgatgaatacatctaatttcattggaggatacatagtggcatttgctttgttatggagattagcaattgttg |
2585269 |
T |
|
| Q |
218 |
ggttcccttttttggtattactagtgattcctggtttcatgtatggaaggacttcgatgggattggctagaaaaattagggaagagtacaataaagccgg |
317 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
2585270 |
ggttcccttttgtggtactacttgtgattcctggtttcatgtatgggagagtttcgatggggttggctagaaaaattagagaagagtacaataaagctgg |
2585369 |
T |
|
| Q |
318 |
tacaatagcagaacaaacaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccatagctgctttctctg |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
2585370 |
tacaatagcagaacaagcaatatcttcaattagaactgtttattcctttgcaggagaaagcaaaaccatagatgctttctctg |
2585452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 118 - 400
Target Start/End: Original strand, 2447716 - 2447998
Alignment:
| Q |
118 |
ttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttg |
217 |
Q |
| |
|
||||||| |||| |||||||||||||||||| | |||| |||| |||| |||| | |||||||| |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
2447716 |
ttgaaaactatacaggttccaaattttttgaagcatgtatctaagttcattgggaactacatagtggcatttgcattgttatggagattggccattgttg |
2447815 |
T |
|
| Q |
218 |
ggttcccttttttggtattactagtgattcctggtttcatgtatggaaggacttcgatgggattggctagaaaaattagggaagagtacaataaagccgg |
317 |
Q |
| |
|
||||||||||| |||| || | |||| |||||| ||||| ||| |||| | ||| | ||||||||||| || || |||||||||||| |||| || |
|
|
| T |
2447816 |
ggttcccttttgtggttctaattgtgactcctggcttcatatataagaggattatgattaggttggctagaaatatcagagaagagtacaatcaagctgg |
2447915 |
T |
|
| Q |
318 |
tacaatagcagaacaaacaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccatagctgctttctctg |
400 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||| |||| ||||| || || ||| |||||||||||| |
|
|
| T |
2447916 |
tacaatagcagaacaagcgatatcttcaattagaactgtttattcctttgcaggggaaaataagactatatctgctttctctg |
2447998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 128 - 399
Target Start/End: Original strand, 2431691 - 2431962
Alignment:
| Q |
128 |
tataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttgggttcccttt |
227 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||||||| |||| |||||| ||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
2431691 |
tataggttccaaattttttggtgaatgcatctaggttcctttcaagcaacatagtagcatttgcattattatggagattggctattgttggattcccttt |
2431790 |
T |
|
| Q |
228 |
tttggtattactagtgattcctggtttcatgtatggaaggacttcgatgggattggctagaaaaattagggaagagtacaataaagccggtacaatagca |
327 |
Q |
| |
|
| |||| | || ||||| ||||||| ||||||| |||| ||||||| | ||||||||||| ||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
2431791 |
tatggttcttcttgtgatccctggttacatgtataagaggatttcgatgaggttggctagaaagattagagaagagtacaatcaagctggtacaatagcg |
2431890 |
T |
|
| Q |
328 |
gaacaaacaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccatagctgctttctct |
399 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||| ||| ||| |||| |||||| |||| ||||||||| |
|
|
| T |
2431891 |
gaacaagcaatatcttctataagaactgtttattcttttgtaggggaaagcaaaactctagcagctttctct |
2431962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 288 - 399
Target Start/End: Complemental strand, 53664911 - 53664800
Alignment:
| Q |
288 |
aaaaattagggaagagtacaataaagccggtacaatagcagaacaaacaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccata |
387 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
53664911 |
aaaaatgagagaagagtacaataaagccggtataatagcagaacaagcaatttcttcaattagaactgtttattcctttgcaggagaaagcaaaaccata |
53664812 |
T |
|
| Q |
388 |
gctgctttctct |
399 |
Q |
| |
|
|||||||||||| |
|
|
| T |
53664811 |
gctgctttctct |
53664800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 33801722 - 33801833
Alignment:
| Q |
288 |
aaaaattagggaagagtacaataaagccggtacaatagcagaacaaacaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccata |
387 |
Q |
| |
|
|||||| || |||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
33801722 |
aaaaatgagagaagagtaaaataaagccggtaaaatagcagaacaagcaatttcttcaattagaactgtttattcctttgcaggagaaagcaaaaccata |
33801821 |
T |
|
| Q |
388 |
gctgctttctct |
399 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33801822 |
gctgctttctct |
33801833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 292 - 399
Target Start/End: Complemental strand, 17874483 - 17874376
Alignment:
| Q |
292 |
attagggaagagtacaataaagccggtacaatagcagaacaaacaatatcttcaattagaactgtttattcctttacaggagaaaacaaaaccatagctg |
391 |
Q |
| |
|
||||| |||||||| ||| |||| |||||||| |||||||||||||||||| | ||||||||||| ||||| ||| |||||||||||| |||| || |
|
|
| T |
17874483 |
attagagaagagtataatcaagctggtacaattgcagaacaaacaatatctaccattagaactgtctattcatttgtgggagaaaacaaatccatgtttg |
17874384 |
T |
|
| Q |
392 |
ctttctct |
399 |
Q |
| |
|
|||||||| |
|
|
| T |
17874383 |
ctttctct |
17874376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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