View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10795_low_2 (Length: 377)
Name: NF10795_low_2
Description: NF10795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10795_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 48801521 - 48801184
Alignment:
| Q |
20 |
tcaggttcataatataaacccaaatctatatctatattatttacattttagaatttaccaagacttgaacatagtactggtannnnnnnn----atttca |
115 |
Q |
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| T |
48801521 |
tcaggttcataatataaacccaaatctatatctatattatttacattttagaatttaccaagacttgaacatagtactagtattttttttttttatttca |
48801422 |
T |
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| Q |
116 |
agtaaaattccataaagtaacacattttggtcggtagaaataattaaactatagatgctttgtagatgatattatctaatcaaatttgttataattgcca |
215 |
Q |
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| T |
48801421 |
agtaaaattccataaagtaacacattttggtcggtagaaataattaaactatagatgctttgtagatgatatcatctaatcaaatttgttataattgcca |
48801322 |
T |
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| Q |
216 |
tcttgacatgttgagagtactacgttggatagtaatatgatctgaacgaggattatagttgaaggcaaccgtcattccatgtagtagtttttgaggttga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48801321 |
tcttgacatgttgagagtactacgttggatagtaatatgatctgaacgatgattatagttgaaggcaaccgtcattccatgtagtagtttttgaggttga |
48801222 |
T |
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| Q |
316 |
acaaagaattataattctgatatggtaaacaaagtata |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
48801221 |
acaaagaattataattctgatatggtaaacaaagtata |
48801184 |
T |
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