View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10795_low_7 (Length: 241)

Name: NF10795_low_7
Description: NF10795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10795_low_7
NF10795_low_7
[»] chr5 (2 HSPs)
chr5 (15-94)||(10548191-10548270)
chr5 (44-94)||(20319537-20319587)
[»] chr3 (3 HSPs)
chr3 (7-96)||(52098942-52099038)
chr3 (176-223)||(52099110-52099157)
chr3 (36-87)||(30174411-30174462)
[»] chr7 (1 HSPs)
chr7 (15-80)||(47762072-47762137)
[»] chr1 (9 HSPs)
chr1 (23-87)||(11398283-11398347)
chr1 (15-93)||(18136433-18136512)
chr1 (15-80)||(52935169-52935234)
chr1 (15-80)||(52942804-52942869)
chr1 (15-80)||(52946212-52946277)
chr1 (181-220)||(18136560-18136599)
chr1 (15-87)||(31230344-31230416)
chr1 (180-223)||(11398153-11398197)
chr1 (44-93)||(41956096-41956145)
[»] scaffold0590 (2 HSPs)
scaffold0590 (15-94)||(5021-5102)
scaffold0590 (31-92)||(7701-7762)
[»] chr4 (3 HSPs)
chr4 (15-80)||(40225492-40225557)
chr4 (44-94)||(5373891-5373941)
chr4 (180-223)||(17225133-17225177)
[»] chr2 (1 HSPs)
chr2 (15-84)||(42735279-42735350)


Alignment Details
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 10548191 - 10548270
Alignment:
Q  15 agaagggacattatagaaaataggaatatggacccttataaatataagaaaagtcaaggaaataagcatggaatatgtgt 94  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||| |||||||||||||    
T  10548191 agaaggggcattatggaaaataggaatatggacctttataaatatgagaaaagccaaggaaataagtatggaatatgtgt 10548270  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 20319587 - 20319537
Alignment:
Q  44 ggacccttataaatataagaaaagtcaaggaaataagcatggaatatgtgt 94  Q
    |||||||||||||||  ||||||||| |||||||||||||| |||||||||    
T  20319587 ggacccttataaataagagaaaagtccaggaaataagcatgaaatatgtgt 20319537  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 52098942 - 52099038
Alignment:
Q  7 gagtgagaagaagggacattatagaaaataggaatatggacccttataaat-------ataagaaaagtcaaggaaataagcatggaatatgtgtta 96  Q
    |||| ||||||| |||||||||||||||||||||||| |||||||||||||       |||||||| ||||| ||||||||||||||||||||||||    
T  52098942 gagttagaagaaaggacattatagaaaataggaatatagacccttataaatataagaaataagaaaggtcaaagaaataagcatggaatatgtgtta 52099038  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 52099110 - 52099157
Alignment:
Q  176 aatagttattttacttgctaattggttgtattcctccttagtttatac 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52099110 aatagttattttacttgctaattggttgtattcctccttagtttatac 52099157  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 30174462 - 30174411
Alignment:
Q  36 aggaatatggacccttataaatataagaaaagtcaaggaaataagcatggaa 87  Q
    ||||||||||| |||||||||||  ||||||| |||||||||||||||||||    
T  30174462 aggaatatggatccttataaataagagaaaagccaaggaaataagcatggaa 30174411  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 47762072 - 47762137
Alignment:
Q  15 agaagggacattatagaaaataggaatatggacccttataaatataagaaaagtcaaggaaataag 80  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  47762072 agaaggggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 47762137  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 11398347 - 11398283
Alignment:
Q  23 cattatagaaaataggaatatggacccttataaatataagaaaagtcaaggaaataagcatggaa 87  Q
    |||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  11398347 cattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggatggaa 11398283  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 18136433 - 18136512
Alignment:
Q  15 agaagggacattatagaaaataggaatatggacccttataaatataag-aaaagtcaaggaaataagcatggaatatgtg 93  Q
    ||||||| |||||| | |||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||    
T  18136433 agaaggggcattatgggaaataggaatatggacccttataaatatgagaaaaagccaaggaaataagcatgaaatatgtg 18136512  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 52935169 - 52935234
Alignment:
Q  15 agaagggacattatagaaaataggaatatggacccttataaatataagaaaagtcaaggaaataag 80  Q
    ||||||| |||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  52935169 agaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52935234  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 52942804 - 52942869
Alignment:
Q  15 agaagggacattatagaaaataggaatatggacccttataaatataagaaaagtcaaggaaataag 80  Q
    ||||||| |||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  52942804 agaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52942869  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 52946212 - 52946277
Alignment:
Q  15 agaagggacattatagaaaataggaatatggacccttataaatataagaaaagtcaaggaaataag 80  Q
    ||||||| |||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  52946212 agaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52946277  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 18136560 - 18136599
Alignment:
Q  181 ttattttacttgctaattggttgtattcctccttagttta 220  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18136560 ttattttacttgctaattggttgtattcctccttagttta 18136599  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 31230416 - 31230344
Alignment:
Q  15 agaagggacattatagaaaataggaatatggacccttataaatataagaaaagtcaaggaaataagcatggaa 87  Q
    ||||||| | |||| | |||||||||||||||||||||||||||| ||||||  ||| | |||||||||||||    
T  31230416 agaaggggcgttatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataagcatggaa 31230344  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 11398197 - 11398153
Alignment:
Q  180 gttattttacttgctaattggttg-tattcctccttagtttatac 223  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  11398197 gttattttacttgcaaattggttgttattcctccttagtttatac 11398153  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 41956096 - 41956145
Alignment:
Q  44 ggacccttataaatataagaaaagtcaaggaaataagcatggaatatgtg 93  Q
    |||||||||||||||  |||||||||||||||||| ||||| ||| ||||    
T  41956096 ggacccttataaataagagaaaagtcaaggaaataggcatgaaatgtgtg 41956145  T

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Target: scaffold0590 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 5102 - 5021
Alignment:
Q  15 agaagggacattatagaaaataggaatatggacccttata--aatataagaaaagtcaaggaaataagcatggaatatgtgt 94  Q
    ||||||| |||||| | |||||||||||||||||||||||  ||||| ||||||| |||||||||||||||| |||||||||    
T  5102 agaaggggcattatgggaaataggaatatggacccttatataaatatgagaaaagccaaggaaataagcatgaaatatgtgt 5021  T

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Target: scaffold0590; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 7762 - 7701
Alignment:
Q  31 aaaataggaatatggacccttataaatataagaaaagtcaaggaaataagcatggaatatgt 92  Q
    |||||||||||||| |||||||||||||  |||||| ||||| ||||||||||| |||||||    
T  7762 aaaataggaatatgaacccttataaatacgagaaaaatcaagaaaataagcatgaaatatgt 7701  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 40225557 - 40225492
Alignment:
Q  15 agaagggacattatagaaaataggaatatggacccttataaatataagaaaagtcaaggaaataag 80  Q
    ||||||| |||||| | ||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  40225557 agaaggggcattatgggaaataggaatatggaccctaataaatatgagaaaagccaaggaaataag 40225492  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 5373941 - 5373891
Alignment:
Q  44 ggacccttataaatataagaaaagtcaaggaaataagcatggaatatgtgt 94  Q
    |||||||||||||||  |||||||||||||||||||||||| || ||||||    
T  5373941 ggacccttataaataagagaaaagtcaaggaaataagcatgaaaaatgtgt 5373891  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 17225177 - 17225133
Alignment:
Q  180 gttattttacttgctaattggttg-tattcctccttagtttatac 223  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  17225177 gttattttacttgcaaattggttgttattcctccttagtttatac 17225133  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 42735279 - 42735350
Alignment:
Q  15 agaagggacattatagaaaataggaatatggaccct--tataaatataagaaaagtcaaggaaataagcatg 84  Q
    ||||||| |||||| | |||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  42735279 agaaggggcattatgggaaataggaatatggaccctcttataaatatgagaaaaggcaaggaaataagcatg 42735350  T

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