View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10796_1 (Length: 652)

Name: NF10796_1
Description: NF10796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10796_1
NF10796_1
[»] chr8 (2 HSPs)
chr8 (578-650)||(12933811-12933883)
chr8 (601-638)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (578-650)||(14177081-14177153)
chr4 (578-648)||(28608724-28608794)
chr4 (586-639)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (571-608)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (571-608)||(796698-796735)
chr6 (571-608)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (571-608)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 650
Target Start/End: Original strand, 12933811 - 12933883
Alignment:
Q  578 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 650  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 12933883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 638
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  601 catggagatttggaagaggagatttatatggagcaacc 638  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 650
Target Start/End: Original strand, 14177081 - 14177153
Alignment:
Q  578 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 650  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 14177153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 578 - 648
Target Start/End: Complemental strand, 28608794 - 28608724
Alignment:
Q  578 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggattt 648  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt 28608724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 639
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  586 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 639  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 608
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  571 gagcagttggatgtgaaaactgcatttcttcatggaga 608  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 608
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  571 gagcagttggatgtgaaaactgcatttcttcatggaga 608  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 608
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  571 gagcagttggatgtgaaaactgcatttcttcatggaga 608  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 608
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  571 gagcagttggatgtgaaaactgcatttcttcatggaga 608  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University