View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10796_2 (Length: 361)
Name: NF10796_2
Description: NF10796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10796_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 47332792 - 47333152
Alignment:
| Q |
1 |
aaccaaactcaaaagcttccaatcttagtttactatcatggtggtgctttttgtcttgaatcagctttctcttttcttcaccaacgttaccttaacatca |
100 |
Q |
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| T |
47332792 |
aaccaaactcaaaagcttccaatcttagtttactatcatggtggtgctttttgtcttgaatcagctttctcttttcttcaccaacgttaccttaacatca |
47332891 |
T |
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| Q |
101 |
ttgcttcacaagcaaatgttcttgttgtttctgttgaatatagacttgcaccagaacaccctcttcctgctgcatatgatgatggttggttttctctcaa |
200 |
Q |
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| T |
47332892 |
ttgcttcacaagcaaatgttcttgttgtttctgttgaatatagacttgcaccagaacaccctcttcctgctgcatatgatgatggttggttttctctcaa |
47332991 |
T |
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| Q |
201 |
atggatcacttctcattccatcaacaacatcaataacgctgaaccatggttaatcaaatacggtgattttgaccgtttttacattggtggtgatacttca |
300 |
Q |
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| T |
47332992 |
atggatcacttctcattccatcaacaacatcaataacgctgaaccatggttaatcaaatacggtgattttgaccgtttttacattggtggtgatacttca |
47333091 |
T |
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| Q |
301 |
ggtgcaaatattgcacataatgcacttcttcgtgttggtaatggtgttgaaactttacctg |
361 |
Q |
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| T |
47333092 |
ggtgcaaatattgcacataatgcacttcttcgtgttggtaatggtgttgaaactttacctg |
47333152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 47301359 - 47301406
Alignment:
| Q |
124 |
gttgtttctgttgaatatagacttgcaccagaacaccctcttcctgct |
171 |
Q |
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| T |
47301359 |
gttgtttctgttgaatacagacttgctccagaacaccctctacctgct |
47301406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 47304257 - 47304304
Alignment:
| Q |
124 |
gttgtttctgttgaatatagacttgcaccagaacaccctcttcctgct |
171 |
Q |
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| T |
47304257 |
gttgtttctgttgaatacagactcgctccagaacaccctctacctgct |
47304304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 17841494 - 17841543
Alignment:
| Q |
122 |
ttgttgtttctgttgaatatagacttgcaccagaacaccctcttcctgct |
171 |
Q |
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| T |
17841494 |
ttgttgtttctgttgaatacagactcgctccagaacaccctctacctgct |
17841543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 17473195 - 17473243
Alignment:
| Q |
101 |
ttgcttcacaagcaaatgttcttgttgtttctgttgaatatagacttgc |
149 |
Q |
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| T |
17473195 |
ttgcatcacaagcaaatgtgattgttgtttcaattgaatatagacttgc |
17473243 |
T |
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