View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10796_5 (Length: 308)
Name: NF10796_5
Description: NF10796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10796_5 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 49671800 - 49671522
Alignment:
| Q |
1 |
tcttcaactctatgctcaggcacatccttcccactttcaattctcatcaacatcttcaaaacctcttccatggaaggtctcaattccttgtccctttgca |
100 |
Q |
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| T |
49671800 |
tcttcaactatatgctcaggcacatccttcccactttcaattctcatcaacatcttcaaaacctcttccatggaaggtctcaattccttgtccctttgca |
49671701 |
T |
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| Q |
101 |
aacattgaaaagctaactctgccaccgaaactatcatccgctttatctcattgtctgaatcaaaaccaagataaggatccaccaactcaattaatgcacc |
200 |
Q |
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| T |
49671700 |
aacattgaaaagctaactctgccaccgaaactatcatccgctttatctcattgtctgaatcaaaaccaagataaggatccaccaactcaattaatgcacc |
49671601 |
T |
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| Q |
201 |
ctcttgtattttctttaaggccaggtttgacaagttaatctcatccttatgcctgttcatatcaactggaagcttagat |
279 |
Q |
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| T |
49671600 |
ctcttgtattttctttaaggccaggtttgacaagttaatctcatccttatgcctcttcatatcaactggaagcttagat |
49671522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 49667766 - 49667651
Alignment:
| Q |
64 |
tcttccatggaaggtctcaattccttgtccctttgcaaacattgaaaagctaactctgccaccgaaactatcatccgctttatctcattgtctgaatcaa |
163 |
Q |
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| T |
49667766 |
tcttccatagaaggtcttaactctttgtccttttgcaaacactgaaaagccaattctgccactgaaactatcatcctattaacctcactgtctgaatgaa |
49667667 |
T |
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| Q |
164 |
aaccaagataaggatc |
179 |
Q |
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| T |
49667666 |
aaccaagagaaggatc |
49667651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 49683984 - 49683928
Alignment:
| Q |
47 |
tcaacatcttcaaaacctcttccatggaaggtctcaattccttgtccctttgcaaac |
103 |
Q |
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| T |
49683984 |
tcaacacctccaaaacctcatccattgaaggcctcaattccttgtcccgttgcaaac |
49683928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 49675968 - 49675878
Alignment:
| Q |
32 |
cactttcaattctcatcaacatcttcaaaacctcttccatggaaggtctcaattccttgtccctttgcaaacattgaaaagctaactctgc |
122 |
Q |
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| T |
49675968 |
cactatcaattctcctcagcacgtccaaaacctcatccattgagggcctcaattccttatcccgctgcaaacactgaaaagccaactctgc |
49675878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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