View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10797_2 (Length: 388)
Name: NF10797_2
Description: NF10797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10797_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 43532980 - 43532634
Alignment:
| Q |
18 |
atcatcagcttctttttcctacnnnnnnncaattgtatgttacacaaatttgtaaaatattagttggaagcgttgtaacttgatactgtggcaacaagtg |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532980 |
atcatcagcttctttttcctacaaaaaaacaattgtatgttacacaaatttgtaaaatattagttggaagcgttgtaacttgatactgtggcaacaagtg |
43532881 |
T |
|
| Q |
118 |
acaaaaacgacatcataagtctttgaacaagctgtgcatttgctagaagactagaaactggtctaggaattaagaagatctactggtagtggtacacgag |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532880 |
acaaaaatgacatcataagtctttgaacaagctgtgcatttgctagaagactagaaactggtctaggaattaagaagatctactggtagtggtacacgag |
43532781 |
T |
|
| Q |
218 |
caccaaatatgttacagggccaagtaacatgaacatgattcgatggcaacaacccgctctagctagactcaagtgtactgtagacgcttctttttctaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532780 |
caccaaatatgttacagggccaagtaacatgaacatgattcgatggcaacaacccgctctagctagactcaagtgtactgtagacgcttctttttctaat |
43532681 |
T |
|
| Q |
318 |
tctcgtaacaaggttggtattggtatttgtatttgagatgccgacgg |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43532680 |
tctcgtaacaaggttggtattggtatttgtatttgagatgccgacgg |
43532634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University