View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_high_15 (Length: 237)
Name: NF10798_high_15
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 15076896 - 15076683
Alignment:
| Q |
8 |
cccattacaaaaactttcaaaagtttcctccaagcttaataccggtaaagatggatgttttgaccttattttattaatgaaaatccaatatgacacaaaa |
107 |
Q |
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|||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15076896 |
cccattacaaaaactttcaaaagtttcctctaagcttaaaactggtaaagatggatgttttgaccttattttattaatgaaaatccaatatgacacaaaa |
15076797 |
T |
|
| Q |
108 |
ttatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtgaagaaaatggaatgtgagtcccaaatatccttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| |
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| T |
15076796 |
gtatcaaatggatttctacttatataaactatcttacaattggagtcttgaattgacttggcaagtgaaggaaatggaatgtgagtcccaaaaagccttg |
15076697 |
T |
|
| Q |
208 |
gttcaattattttt |
221 |
Q |
| |
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|||||||||||||| |
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| T |
15076696 |
gttcaattattttt |
15076683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 15171612 - 15171830
Alignment:
| Q |
6 |
accccattacaaaaactttcaaaagtttcctccaagcttaataccggtaaagatggatgttttgaccttattttattaatgaaaatccaatatgacacaa |
105 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
15171612 |
accccattacaaaaactttcaaaagtttcctctaagcttaaaactgataaagatggatgttttgaccttattttattaacgaaactccaatatgacacaa |
15171711 |
T |
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| Q |
106 |
aattatcaaatggatttctacttatataa---actatcttacaattagactcttgaattgacttggcaagtgaagaaaatggaatgtgagtcccaaatat |
202 |
Q |
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| T |
15171712 |
aagtatcaaatggatttctacttatataaactactatcttacaattggactcttgaattgacttggcaagtgaaggaaatggaatgtgagtcccaaaaag |
15171811 |
T |
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| Q |
203 |
ccttggttcaattattttt |
221 |
Q |
| |
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||||||||||||||||||| |
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| T |
15171812 |
ccttggttcaattattttt |
15171830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 97 - 221
Target Start/End: Original strand, 15168868 - 15168992
Alignment:
| Q |
97 |
atgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtgaagaaaatggaatgtgagtccc |
196 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15168868 |
atgacacaaaagtatcaaatggatttctacttatataaactatcttacaattagactcttgaatcgacttggcaagtgaagaaaatggaatgtgagtccc |
15168967 |
T |
|
| Q |
197 |
aaatatccttggttcaattattttt |
221 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
15168968 |
aaatatccttggttcaattattttt |
15168992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 15165243 - 15165346
Alignment:
| Q |
4 |
ttaccccattacaaaaactttcaaaagtttcctccaagcttaataccggtaaagatggatgttttgaccttattttattaatgaaaatccaatatgacac |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
15165243 |
ttaccccattacaaaaactttcaaaagtttcctttaagcttacaatttgtaaagatggatgttttgaccttattttattaacgaaactccaatatgacac |
15165342 |
T |
|
| Q |
104 |
aaaa |
107 |
Q |
| |
|
|||| |
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|
| T |
15165343 |
aaaa |
15165346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 15066876 - 15066747
Alignment:
| Q |
84 |
atgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtgaagaaaatg |
183 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||| ||||||| |||||||| ||| |||||||| ||||||||||||||||||| | |||| ||||| |
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| T |
15066876 |
atgaaagtccaatatgatacaaatgtatcaaatgggtttctacatatataaattattttacaattggactcttgaattgacttgggcaacgaaggaaatg |
15066777 |
T |
|
| Q |
184 |
gaatgtgagtcccaaatatccttggttcaa |
213 |
Q |
| |
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| |||||||| ||| | | ||||||||||| |
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| T |
15066776 |
gcatgtgagttccataaagccttggttcaa |
15066747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 15214555 - 15214692
Alignment:
| Q |
75 |
attttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtg |
174 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| |||||||||| ||||||| |||||||| ||| |||||||| ||||||| || |||||||| | | |
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| T |
15214555 |
attttgttgatgaaaatccaatatgatacaaatgtatcaaatgggtttctacatatataaattattttacaattggactctttaactgacttgggcaacg |
15214654 |
T |
|
| Q |
175 |
aagaaaatggaatgtgagtcccaaatatccttggttca |
212 |
Q |
| |
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||| |||||| |||||||| ||||| | |||||||||| |
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| T |
15214655 |
aaggaaatggcatgtgagttccaaaaagccttggttca |
15214692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 4506498 - 4506705
Alignment:
| Q |
1 |
gacttaccccattacaaaaactttcaaaagtttcctccaagcttaataccggtaaagatggatgttttgaccttattttattaatgaaaatccaatatga |
100 |
Q |
| |
|
|||||| ||||| |||| ||||||||||| |||| || | |||||| ||||||||| ||| ||||||||||||||||| ||| |||| || |
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| T |
4506498 |
gacttatcccatcacaataactttcaaaaatttcatctatgcttaaagttggtaaagattgat---ttgaccttattttattagcataaaaccaagcaga |
4506594 |
T |
|
| Q |
101 |
cacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtgaagaaaatggaatgtgagtcccaaat |
200 |
Q |
| |
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||||||| | ||||| |||||||||| |||||||| ||| |||||||| ||||||| |||||||||||| |||||| | ||||||| ||||| ||||| |
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| T |
4506595 |
cacaaaagtgtcaaaaggatttctacatatataaattattttacaattggactctttaattgacttggctagtgaaaagaatggaacatgagt-ccaaaa |
4506693 |
T |
|
| Q |
201 |
atccttggttca |
212 |
Q |
| |
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| |||||||||| |
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| T |
4506694 |
agccttggttca |
4506705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 1618179 - 1618318
Alignment:
| Q |
75 |
attttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtg |
174 |
Q |
| |
|
||||| || |||||| ||||||| ||||||||| | |||||||| ||||||| ||| |||| |||||||||||| || |||| |||||||||||| || | |
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|
| T |
1618179 |
attttgttcatgaaattccaataagacacaaaagtgtcaaatgggtttctacatatgtaaattatcttacaattggattctttaattgacttggctagag |
1618278 |
T |
|
| Q |
175 |
aagaaaatggaatgtgagtcccaaatatccttggttcaat |
214 |
Q |
| |
|
||| ||| ||||| ||||| ||||| | |||||||||||| |
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|
| T |
1618279 |
aagtaaaaggaatatgagttccaaaaagccttggttcaat |
1618318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 1626744 - 1626883
Alignment:
| Q |
75 |
attttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtg |
174 |
Q |
| |
|
||||| || |||||| ||||||| ||||||||| | |||||||| || |||| ||| |||| |||||||||||| ||||||| ||| |||||||| || | |
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| T |
1626744 |
attttgttcatgaaattccaataagacacaaaagtgtcaaatgggttcctacatatgtaaattatcttacaattggactctttaatagacttggctagag |
1626843 |
T |
|
| Q |
175 |
aagaaaatggaatgtgagtcccaaatatccttggttcaat |
214 |
Q |
| |
|
|| || ||||||||||| ||||| |||||||||||||| |
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| T |
1626844 |
aatggaaaggaatgtgagttccaaaaatccttggttcaat |
1626883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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