View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10798_high_16 (Length: 234)
Name: NF10798_high_16
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_high_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 1792337 - 1792550
Alignment:
| Q |
26 |
aactttttccagtcatatagtgatccatatgatcaaactgctagtgtttcattggttatgcttccattgctggcttcaagtttgatgcttgttcatttg- |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1792337 |
aactttttccagtcatatagtgatccatatgatcaaactgctagtgtttcattggttatgcttccattgttggcttcaagtttgatgcttgttcatttgt |
1792436 |
T |
|
| Q |
125 |
---------------tcaaaagacaaatacatagatgatatcacacgtccactatctaaggtttaagaaatatggaaaagaattttcctctgnnnnnnng |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |
|
|
| T |
1792437 |
caaaagacaaatacatcaaaagacaaatacatagatgatatcacacgtccactatctaaggtgtaagaaatctggaaaagaattttcctctgaaaaaaag |
1792536 |
T |
|
| Q |
210 |
aagcatgatgaatt |
223 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1792537 |
aagcatgatgaatt |
1792550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 43307826 - 43307781
Alignment:
| Q |
10 |
ttctggctggaaatagaactttttccagtcatatagtgatccatat |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
43307826 |
ttctggctggaaatagaactttttccagtcatgtagggatccatat |
43307781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University