View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_high_4 (Length: 339)
Name: NF10798_high_4
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 1182352 - 1182683
Alignment:
| Q |
1 |
cgaactgcataagacactttatggatcgaagcaggctcctagagaatggaacaaatgaattgatcagttcttgatttaaattggatttaaaagatgcaaa |
100 |
Q |
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| T |
1182352 |
cgaactgcataagacactttatggattgaagcaggctcctagagaatggaacaaatgaattgatcagttcttgatttaaattggatttaaaagatgcaaa |
1182451 |
T |
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| Q |
101 |
gctgaatatggtatgtatgttcagaacttgagtgaaagtgatatcacaatgatataattatatgtgaatgagctattggtaactggaagtaatcaaagtg |
200 |
Q |
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| T |
1182452 |
gttgaatatggtatgtatgttcagaacttgagtgaaagtgatatcacaatgatataattatatgtgaatgagctattggtaactggaagtaatcaaagtg |
1182551 |
T |
|
| Q |
201 |
agattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaaaactctcttatttctgaggaatggagtttaaagctagcaagat |
300 |
Q |
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| T |
1182552 |
agattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaaaactctcttatttcttaggaatggagtttaaagctagcaagat |
1182651 |
T |
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| Q |
301 |
gggaa-----atgcatcatcagaagtacattg |
327 |
Q |
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| T |
1182652 |
gggaaaggttatgcatcatcagaagtacattg |
1182683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 8169495 - 8169245
Alignment:
| Q |
15 |
cactttatggatcgaagcaggctcctagagaatggaacaaatgaattgatcagttcttgatttaaattggatttaaaagatgcaaagctgaatatggtat |
114 |
Q |
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| T |
8169495 |
cactttatggctttaagtaggcttctagagcatggaacaagagaattgactagttcatgattcaacttggattcaaaagatgcaaagctgagtatggtat |
8169396 |
T |
|
| Q |
115 |
gtatgttcagaacttgagtgaaagtgatatcacaatgatataattatatgtgaatgagctattggtaactggaagtaatcaaagtgagattgagaagttc |
214 |
Q |
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| |||||||||||| | |||| | |||||||| |||| ||| |||||| |||| ||||| ||||||||||| ||| |||||||||||||||| ||| |
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| T |
8169395 |
gcatgttcagaactcgggtgagactgatatcataatgt----att-tatgtggatgatctattagtaactggaagcaattaaagtgagattgagaaattc |
8169301 |
T |
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| Q |
215 |
aaacacacaatgtagtgtgaatttgaaatgactgatttaggaaaactctcttattt |
270 |
Q |
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| T |
8169300 |
aaacacacaatgcagtgtgaatttaaaatgaccgacttaggaagattttcttattt |
8169245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 271
Target Start/End: Complemental strand, 32369138 - 32368905
Alignment:
| Q |
38 |
cctagagaatggaacaaatgaattgatcagttcttgatttaaattggatttaaaagatgcaaagctgaatatggtatgtatgttcagaacttgagtgaaa |
137 |
Q |
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| T |
32369138 |
cctagagcatggaacaagaggattgatcagttcctacttcaaattggtttcaagaaatgcaaagctgagtatggaatatatgttcagaaactgaatgaat |
32369039 |
T |
|
| Q |
138 |
gtgatatcacaatgatataattatatgtgaatgagctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatt |
237 |
Q |
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| T |
32369038 |
agaacataactgtgatatgcttatatgtagatgacctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacactatgcagtgtgaatt |
32368939 |
T |
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| Q |
238 |
tgaaatgactgatttaggaaaactctcttatttc |
271 |
Q |
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| T |
32368938 |
tgaaatgacttatttaggaagactatcatatttc |
32368905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 26075976 - 26076068
Alignment:
| Q |
179 |
gtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaaaactctcttatttc |
271 |
Q |
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| T |
26075976 |
gtaactggaagtaatccaagtgagattgagaagttcaaacacactatgaagtgtgagtttgaaatgactggtttgggaagattatcttatttc |
26076068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 257
Target Start/End: Original strand, 12368312 - 12368411
Alignment:
| Q |
158 |
ttatatgtgaatgagctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaa |
257 |
Q |
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| T |
12368312 |
ttatatgtaaatgacttactagtaactggaagtaatccaactgagattgagaagttcaaacacactatgaagtgtgagtttgaaatgactgatttgggaa |
12368411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 4958963 - 4958885
Alignment:
| Q |
179 |
gtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaa |
257 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||| |||| |
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| T |
4958963 |
gtaactagaagtaatccaagtgagattgagaagttcaaacacactatgaagtgtgagtttgaaatgattgatttgggaa |
4958885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 4959104 - 4959015
Alignment:
| Q |
38 |
cctagagaatggaacaaatgaattgatcagttcttgatttaaattggatttaaaagatgcaaagctgaatatggtatgtatgttcagaac |
127 |
Q |
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||||||| |||||| || | |||||||||||| | || |||||||||| |||| ||||||||| ||||||||||| ||||| |||||| |
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| T |
4959104 |
cctagagcatggaataagaggattgatcagttcctacttcaaattggattcaaaaaatgcaaagcagaatatggtatatatgtccagaac |
4959015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 5242769 - 5242882
Alignment:
| Q |
158 |
ttatatgtgaatgagctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaa |
257 |
Q |
| |
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|||||||| |||| |||||||| ||||||| |||| | ||||||||| |||||||||||||| ||| |||||||||||||||| ||||||| |||| |
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| T |
5242769 |
ttatatgtagatgacctattggtgcctggaagcaatcgtaatgagattgaaaagttcaaacacactatgcggtgtgaatttgaaatgtctgattttggaa |
5242868 |
T |
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| Q |
258 |
aactctcttatttc |
271 |
Q |
| |
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| T |
5242869 |
gactgtcatatttc |
5242882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 5242650 - 5242734
Alignment:
| Q |
39 |
ctagagaatggaacaaatgaattgatcagttcttgatttaaattggatttaaaagatgcaaagctgaatatggtatgtatgttca |
123 |
Q |
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|||||| ||||||||| | |||||||||||| |||||||||| ||||| | |||||||||||| ||||| || |||||||| |
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| T |
5242650 |
ctagagcatggaacaagaggattgatcagttcccactttaaattggttttaagaaatgcaaagctgagtatggaatatatgttca |
5242734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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