View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_1 (Length: 464)
Name: NF10798_low_1
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 443440 - 443869
Alignment:
| Q |
19 |
ttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
116 |
Q |
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| T |
443440 |
ttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
443539 |
T |
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| Q |
117 |
cgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatcttaccttaggtagtttaagcctaattatgattatgtatttttattt |
216 |
Q |
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| T |
443540 |
cgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatcttaccttaggtagtttaagcctaattatgattatgtatttttattt |
443639 |
T |
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| Q |
217 |
cttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagattatagaaattgatgattcagacagtgatgatgaaccaacagagtcac |
316 |
Q |
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| T |
443640 |
cttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagattatagaaattgatgattcagacagtgatgatgaaccaacagagtcac |
443739 |
T |
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| Q |
317 |
ctcaggctatcatccttgataaggtgagattgaataataaagctttgcatgaaagtcnnnnnnnnnnnnnnnnatttagacagtgatagcttcattcttg |
416 |
Q |
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| T |
443740 |
ctcaggctatcatccttgataaggtgagattgaataataaagctttgcatgaaagtc-------tttttttttatttagacagtgatagcttcattcttg |
443832 |
T |
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| Q |
417 |
gcatgcagtcggagaaactaagctcaaccaatttcat |
453 |
Q |
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| T |
443833 |
gcatgcagtcggagaaactaagctcaaccaatttcat |
443869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 465466 - 465379
Alignment:
| Q |
34 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
119 |
Q |
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| T |
465466 |
ttgccatgagagtgcttgtgattctgtggaagctttacaagagggaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
465379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 444670 - 444754
Alignment:
| Q |
34 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
116 |
Q |
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| T |
444670 |
ttgccaaaagagtgcttgtgattctgtggcggctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgctatttgcac |
444754 |
T |
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