View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_13 (Length: 323)
Name: NF10798_low_13
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 31629433 - 31629130
Alignment:
| Q |
1 |
caaacatatgtaatttcactaaagtaacttcaatttgtaatatcttgaaatgatacaatttttattgaagaatattagtagtgatgatgtggtgtctatt |
100 |
Q |
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| T |
31629433 |
caaacatatgtaatttcactaaagtaacttcaatttgtaatatcttgaaatgatacaatttttattgaagaaaattagtagtgatgatgtggtgtctatt |
31629334 |
T |
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| Q |
101 |
ttggactcttgacacatgcaggacaccggacactctttcaacaagaaatgtccgtaacacatgtcattttgattccaattacgtgatttgataattagat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31629333 |
ttggactcttgacacatgaaggacaccggacactctttcaacaagaaatgtccgtaacacatgtcattttgattccaattacgtaatttgataattagat |
31629234 |
T |
|
| Q |
201 |
cattaacaaataattcttatcataaaaagtaagaaaggaagcaaaactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629233 |
cattaacaaataattcttatcataaaaagtaagaaaggaaacaaaactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttga |
31629134 |
T |
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| Q |
301 |
accc |
304 |
Q |
| |
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|||| |
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| T |
31629133 |
accc |
31629130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 192 - 304
Target Start/End: Complemental strand, 31654359 - 31654241
Alignment:
| Q |
192 |
taattagatcattaacaaataattcttatca-taaaa---agtaagaaaggaagcaa--aactgaccagaaaattatgatataaaaatgctctaggctcc |
285 |
Q |
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||||||||||||||||||||||| ||||||| ||||| || ||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31654359 |
taattagatcattaacaaataatccttatcaataaaagcaagcaagaagggaaacaagaaactgacaagaaaattatgatataaaaatgctctaggctcc |
31654260 |
T |
|
| Q |
286 |
cacgatacgatttgaaccc |
304 |
Q |
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||||||| ||||||||||| |
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| T |
31654259 |
cacgatatgatttgaaccc |
31654241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 31650828 - 31650772
Alignment:
| Q |
248 |
tgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaaccc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31650828 |
tgaccagaaaattatgatataaaaatgctctaggctcccacgatatgatttgaaccc |
31650772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 31635684 - 31635625
Alignment:
| Q |
245 |
aactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaaccc |
304 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
31635684 |
aactgaccaaaaaattatgatataaaaatactctaggctcccacgatacgatttcaaccc |
31635625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 31643658 - 31643599
Alignment:
| Q |
245 |
aactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaaccc |
304 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
31643658 |
aactaaccagaaaattatgatataaaaacgctctaggctcccacgatacgatttcaaccc |
31643599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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