View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_14 (Length: 322)
Name: NF10798_low_14
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 310
Target Start/End: Complemental strand, 33155406 - 33155103
Alignment:
| Q |
7 |
gagcagagatttggtgaagacattggagatttcggcacaaaatttggctatcttaagttttcaaattacaataactacacaaaacattccaaatcagagg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33155406 |
gagcagagatttggtgaagacattggagatttcggcacagaattgggctatcttaagttttcgaattacaataactacacaaaacattccaaatcagagg |
33155307 |
T |
|
| Q |
107 |
aaaatttgttgaacaaggtttggcatcaaccagagagaatttttcctgttgatggaactcctgaagtttggcagcctgttttttgggttccagttgacaa |
206 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33155306 |
aaaatttgttgaacaaggtttggtatcaaccagagagaatttttcctgttgatggaactcctgaagtttggcagcctgttttttgggttccagttgacaa |
33155207 |
T |
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| Q |
207 |
aacttactttgaaattgcaagaaagctcaaggtgagttcaaccccctaatcaccatctaattacaagtgtttgtttggttctgcgtgcaaaatttgattt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33155206 |
aacttactttgaaattgcaagaaagctcaaggtgagttcaaccccctaatcaccatctaattacaagtgtttgtttggttctgcgtacaaaatttgattt |
33155107 |
T |
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| Q |
307 |
tgat |
310 |
Q |
| |
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|||| |
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| T |
33155106 |
tgat |
33155103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 33171096 - 33170818
Alignment:
| Q |
7 |
gagcagagatttggtgaagacattggagatttcggcacaaaatttggctatcttaagttttcaaattacaataactacacaaaacattccaaatcagagg |
106 |
Q |
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|||||||| ||||||||||||| ||||||||| ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||| |
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| T |
33171096 |
gagcagaggtttggtgaagacaaaggagatttcagcacagaattgggctatcttaagtttgccaattacaataactacacaaaacattacaaattagagg |
33170997 |
T |
|
| Q |
107 |
aaaatttgttgaacaaggtttggcatcaaccagagagaatttttcctgttgatggaactcctgaagtttggcagcctgttttttgggttccagttgacaa |
206 |
Q |
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| T |
33170996 |
ataatctgttgaacaaggtttggtatcaaccagagagaatttttcctattgatggaactcctgaagtttggcagcctgctttttgggttccagttgacaa |
33170897 |
T |
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| Q |
207 |
aacttactttgaaattgcaagaaagctcaaggtgagttcaaccccctaa-tcaccatctaattacaagtgtttgtttggtt |
286 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||| | ||||||| |||| ||||||||||||||| |
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| T |
33170896 |
aacttactttgaaattgcaagaaagctcaaggtgagtccaa--ccctaattgaccatctcattatgagtgtttgtttggtt |
33170818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 248
Target Start/End: Complemental strand, 33145235 - 33145020
Alignment:
| Q |
33 |
agatttcggcacaaaatttggctatcttaagttttcaaattacaataactacacaaaacattccaaatcagaggaaaatttgttgaacaaggtttggcat |
132 |
Q |
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||||||| ||| | ||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||| | |||| |||||||||| || |
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| T |
33145235 |
agatttcagcaaagaatttggttatcttaagttttccaattacaataactacacaaagcattcaaaatcagtggaaaatcttttgagcaaggtttggtat |
33145136 |
T |
|
| Q |
133 |
caaccagagagaatttttcctgttgatggaactcctgaagtttggcagcctgttttttgggttccagttgacaaaacttactttgaaattgcaagaaagc |
232 |
Q |
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||||||||| |||||||||||| |||||||| |||||||||| ||| | || |||||||||||||||||||||||||||||| ||||| |||||||| | |
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| T |
33145135 |
caaccagaggaaatttttcctgtggatggaacacctgaagttttgcaacatgctttttgggttccagttgacaaaacttacttcgaaatcgcaagaaaac |
33145036 |
T |
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| Q |
233 |
tcaaggtgagttcaac |
248 |
Q |
| |
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|||||||||| ||||| |
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| T |
33145035 |
tcaaggtgagctcaac |
33145020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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