View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_15 (Length: 317)
Name: NF10798_low_15
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 13078069 - 13077823
Alignment:
| Q |
12 |
aaagggtcaaagattgaaaagagtgaggaaactaaagatacttccacactcaaaagagagaagggaaaaacaacacaaaccacagaagaaaagaagccta |
111 |
Q |
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| T |
13078069 |
aaagggtcaaagattgaaaagagtgaggaaactaaagatacttccacactcaaaagagagaagggaaaaacaacacaaaccacagaagaaaagaagccta |
13077970 |
T |
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| Q |
112 |
aaataatggaaacaactccacagtttgacatggctagtggatcaaaaagggagtcggaaaaaatgcaagaggcttctaagagaggatatcaaagagaatc |
211 |
Q |
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| T |
13077969 |
aaataatggaaacaactccacagtttgacatggctagtggatcaaaaagggagtcggaaaaaatgcaagaggcttctaagagacgatatcaaagagaatc |
13077870 |
T |
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| Q |
212 |
agaacaagtcgctcctaagatggatgttgaaccaccaattacagttg |
258 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13077869 |
agaacaagtcactcctaagatggatgttgaaccaccaattacagttg |
13077823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 13073864 - 13073623
Alignment:
| Q |
13 |
aagggtcaaagattgaaaagagtgaggaaactaaagatacttccacactcaaaagagagaagggaaaaacaacacaaaccacagaagaaaagaagcctaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13073864 |
aagggtcaaagattgaaaagagtgaggaaactaaagatacttccacactcaaaagagagaagggaaaaacaacacaaaccacagaagaaaagaagcctaa |
13073765 |
T |
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| Q |
113 |
aataatggaaacaactccacagtttgacatggctagtggatcaaaaagggagtcggaaaaaatgcaagaggcttctaagagaggatatcaaagagaatca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |
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| T |
13073764 |
aataatggaaacaactccacagtttgacatggctagtggatcaaaaagggagtcggaaaaaatgctagaggcttctaagagatgatattaaagagaatca |
13073665 |
T |
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| Q |
213 |
gaacaagtcgctcctaagatggatgttgaaccaccaattaca |
254 |
Q |
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| T |
13073664 |
taacaagtctctcctaagatgtatgttgaaccaccaattaca |
13073623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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