View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_19 (Length: 273)
Name: NF10798_low_19
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_19 |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 1182334 - 1182077
Alignment:
| Q |
8 |
tttcgtctaatagcccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttc |
107 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1182334 |
tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgatcatttcttactgctatctaatgcaacaaccaatctcccattttc |
1182235 |
T |
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| Q |
108 |
taatcttgccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
207 |
Q |
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| T |
1182234 |
taatcttgccactagtgcaaacacttcattataatcaacaccatatcgctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
1182135 |
T |
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| Q |
208 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg |
265 |
Q |
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| T |
1182134 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg |
1182077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 18194189 - 18194053
Alignment:
| Q |
124 |
gcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcattttta |
223 |
Q |
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| T |
18194189 |
gcaaatacctcattatagtcaacaccatatctctgtaggaaacctctagccactaatctggctttgtatttagagattgaaccatcaggattcaatttca |
18194090 |
T |
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| Q |
224 |
ccttgaaaattcatttcacatcaatggttttcttctt |
260 |
Q |
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| T |
18194089 |
ccttgaaaatccatttaacatcaatggttttcttctt |
18194053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 8169576 - 8169821
Alignment:
| Q |
16 |
aatagcccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttg |
115 |
Q |
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| T |
8169576 |
aatagtccatttaggaatgcagactttacatctaaatgaaacaatgaccatttcttactgctggttaatgcaataaccaatctcaatatttctatccttg |
8169675 |
T |
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| Q |
116 |
ccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggatt |
215 |
Q |
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| T |
8169676 |
atactggtgcaaagacttcattatagtcaatttcatattaatgtaggaagcctctagctactagtcttgctttgtgctttgaaaatgtgtcatttggatt |
8169775 |
T |
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| Q |
216 |
catttttaccttgaaaattcatttcacatcaatggttttcttcttc |
261 |
Q |
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| T |
8169776 |
caatttgactttgaaaatccatttcacattaatgtttttcttcttc |
8169821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 260
Target Start/End: Original strand, 32369350 - 32369486
Alignment:
| Q |
124 |
gcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcattttta |
223 |
Q |
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||||| || |||||||| |||||||||||||||| | ||| ||||| || || | || ||||||| ||| |||| || |||| ||||||| ||| | |
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| T |
32369350 |
gcaaatacctcattatagtcaacaccatatctctataagaaacctctggcaaccaatctggctttgtatttggaaaatgattcatcaggattcaatttca |
32369449 |
T |
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| Q |
224 |
ccttgaaaattcatttcacatcaatggttttcttctt |
260 |
Q |
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| T |
32369450 |
ctttgaaaatccatttaacatcaatggttttcttctt |
32369486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 260
Target Start/End: Original strand, 4959228 - 4959452
Alignment:
| Q |
36 |
agacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttca |
135 |
Q |
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| T |
4959228 |
agactttacatctaaatgtgataatgaccagtttttactgcttacaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctca |
4959327 |
T |
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| Q |
136 |
ttataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattc |
235 |
Q |
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| T |
4959328 |
ttatagtctacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcaccttgaaaatcc |
4959427 |
T |
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| Q |
236 |
atttcacatcaatggttttcttctt |
260 |
Q |
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| T |
4959428 |
atttaacatcaatggttttcttctt |
4959452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 17153 - 17071
Alignment:
| Q |
162 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
244 |
Q |
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||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
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| T |
17153 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
17071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 8190578 - 8190496
Alignment:
| Q |
162 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
244 |
Q |
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||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
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| T |
8190578 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
8190496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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