View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_20 (Length: 263)
Name: NF10798_low_20
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 15846693 - 15846929
Alignment:
| Q |
11 |
cagagagcaatgtggcagttgtaattttctattatgcaatgcttaagattacgtagtacaagataagtttaaatacttcgctaagctcgttgctctttca |
110 |
Q |
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| T |
15846693 |
cagagagcaatgtggcagttgtaattttctattatgcaatgcttaagattacatagtacaagataagtttaaatacttcgctaagctcgttgctctttca |
15846792 |
T |
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| Q |
111 |
gctttacttgctctattatgctagagcatcttcccacttatcactgaatataaaccatacttaacacttgacttatggaggactggatatctatttgtga |
210 |
Q |
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| T |
15846793 |
gctttacttgctctattatgctagagcatcttcccacttatcagtgaatataaaccatacttaacacttgacttatggaggactggatatctatttgtga |
15846892 |
T |
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| Q |
211 |
tttgatattaacatcaagtccatttcatgcatgtttg |
247 |
Q |
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| T |
15846893 |
tttgatattaacatcaagtccatttcatgcatgtttg |
15846929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 15860876 - 15861102
Alignment:
| Q |
13 |
gagagcaatgtggcagttgtaattttctattatgcaatgcttaagatt-acgtagtacaagataagtttaaatacttcgctaagctcgttgctctttcag |
111 |
Q |
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| T |
15860876 |
gagagcaatgtggcagttgtaattttctattgtgcaatgcttaagatttacatagtacaagatgtgtttaaatacttccctgcgctcgttgcactttcag |
15860975 |
T |
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| Q |
112 |
ctttacttgctctattatgctagagcatcttcccacttatcactgaatataaaccatacttaacact-----------tgacttatggaggactggatat |
200 |
Q |
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| T |
15860976 |
ctcttctggctctgttatgctagagcctcttcctacttatcagtgcatataattcatacttaacacttcacttatcagtaacttatggaggacttgatat |
15861075 |
T |
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| Q |
201 |
ctatttgtgatttgatattaacatcaa |
227 |
Q |
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| T |
15861076 |
caatttgtgatttaatattaacatcaa |
15861102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 15867286 - 15867423
Alignment:
| Q |
29 |
ttgtaattttctattatgc---aatgcttaaga-ttacgtagtacaagataagtttaaatacttcgctaagctcgttgctctttcagctttacttgctct |
124 |
Q |
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| T |
15867286 |
ttgtaattttctattatgcaaaaatgcttaagatttacatagtgcaagatgtgtttaaatcctgcgctacactcgttgcactttcagctcttctcgctat |
15867385 |
T |
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| Q |
125 |
attatgctagagcatcttcccacttatcactgaatata |
162 |
Q |
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| T |
15867386 |
gttacgctagagcctcttcccagtgatcagtgaatata |
15867423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 15867482 - 15867527
Alignment:
| Q |
184 |
tatggaggactggatatctatttgtgatttgatattaacatcaagt |
229 |
Q |
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| T |
15867482 |
tatggaagacttgatatctatatgtgatttaatattaacatcaagt |
15867527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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