View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_27 (Length: 244)
Name: NF10798_low_27
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 52 - 230
Target Start/End: Original strand, 16352605 - 16352784
Alignment:
| Q |
52 |
aaaacgaataaaaactaacaattcaaaatcataaacgaatattacactatctggattcagaataacaatcaattagacgcataaaaccacgcattgttat |
151 |
Q |
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| T |
16352605 |
aaaacaaataaaaactatcaattcaaaatcataaacgaatatcacactatctggattcagaataacaatcaatcagacacataaaaccacgcattattat |
16352704 |
T |
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| Q |
152 |
ctaatgatcctatttaatcgcatacgtacactaaattgtgc-nnnnnnnnctacgaatcggtgatatcgatgataagaat |
230 |
Q |
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| T |
16352705 |
ctaatgatcctatgtaatcgcatacgtacactaaattgtgcaaaaaaaaactacgaatcggtgatatcgatgataagaat |
16352784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16352486 - 16352538
Alignment:
| Q |
1 |
cataaaaaggccatgaaattgagtttatattacaattacaatctgaaaacaaa |
53 |
Q |
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| T |
16352486 |
cataaaaaggccatgaaattgagtttatattacaattacaatccgaaaacaaa |
16352538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 4786625 - 4786561
Alignment:
| Q |
76 |
aaaatcataaacgaatattacactatctggattcagaataacaatcaattagacgcataaaacca |
140 |
Q |
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| T |
4786625 |
aaaaacatacacgactatcacactatccggattcagaataaaaatcaatcagacacataaaacca |
4786561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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