View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_3 (Length: 432)
Name: NF10798_low_3
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 33096528 - 33096939
Alignment:
| Q |
16 |
aaatatactcaatttcttgctgcagaagttaacaggtcagagaatggttttcatcaccattctttacaagtaaatatgcttttatatgaagtactatggt |
115 |
Q |
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| T |
33096528 |
aaatatactcaatttcttgctgcagaagttaacaggtcagagaattgttttcatcaccattctttacaagtaaatatgcttttatatgaagtactatggt |
33096627 |
T |
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| Q |
116 |
tgctaaactttttatatgatt---ctagtaattttagaatactttcatcactagcaatgctatttggtagaaatattgacatcgagatctttattagtag |
212 |
Q |
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| T |
33096628 |
tgctaaactttttatatgattattctagtcattttagaatactttcatcactagcaatgctatttggtagaaatattgacatcgagatctttattagtag |
33096727 |
T |
|
| Q |
213 |
tgttaagggaatggaaatattactggctgcattttaattataacatgcctttgtgtatctcatattgttttaaactttatggcatacatgccaacaattc |
312 |
Q |
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| T |
33096728 |
tgttaagggaatggaaatattactggctgcattttaattataacatgcctttgtgtatctcatattgttttaaactttat-gcatacatgccaacaattc |
33096826 |
T |
|
| Q |
313 |
tagtagatacacacataacacgtttaaaattttatcacctcttgaattgtatcacttattaaagaaatcaatttaattttatgccaaggtttcattgttt |
412 |
Q |
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| T |
33096827 |
tagtagatacacacataacacatttaaaattttatcacctcttgaattgtatcacttattaaagaaatcaatgtaattttatgccaaggtttcattgttt |
33096926 |
T |
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| Q |
413 |
tttcttcttctct |
425 |
Q |
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| T |
33096927 |
tttcttcttctct |
33096939 |
T |
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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 40743164 - 40743220
Alignment:
| Q |
188 |
ttgacatcgagatctttattagtagtgttaagggaatggaaatattactggctgcat |
244 |
Q |
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||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
40743164 |
ttgacatggagatctttattagttgtgtcaagggaatggaaatattactggctgcat |
40743220 |
T |
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