View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_34 (Length: 233)
Name: NF10798_low_34
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 46472012 - 46471818
Alignment:
| Q |
18 |
attgagtggttccgttctgtttcaaagttattttatccccaagactcagagcaattccctcagttttacttcttactgtgatgtatccactcaatttacc |
117 |
Q |
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| T |
46472012 |
attgagtggttccgttctgtttcaaagttattttatccccaagactcagagcaattccctcagttttacttcttactgtgatgtatccactcaatttacc |
46471913 |
T |
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| Q |
118 |
atctgcttgcttttcaatgctcaaatttgccaaagcatcttcaccaaaaacactcttagcataaaggtttgcagataggaaaccacactcgccgt |
212 |
Q |
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| T |
46471912 |
atctgcttgcttttcaatgctcaaattcgccaaagcatcttcaccaaaaacactcttagcataaaggtttgcagataggaaaccacacttgccgt |
46471818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 1475722 - 1475521
Alignment:
| Q |
18 |
attgagtggttccgttctgtttcaaagttattttatccccaagactcagagcaattccctcagttttacttcttactgtgatgtatccactcaatttacc |
117 |
Q |
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|||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||| || || ||||||||||| |
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| T |
1475722 |
attgagcggttcccttctgtttcaaagtgattttatccccaagactcagagcaattccctgggttttacttcttattctgatataaccgctcaatttacc |
1475623 |
T |
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| Q |
118 |
atctgcttgcttttcaatgctcaaatttgccaaagcatcttcaccaaaaacactcttagcataaaggtttgcagataggaaaccacactcgccgtcctat |
217 |
Q |
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| T |
1475622 |
atcggattgcttctcaatgctcacattcacaagagcatcttccccaaaaacactctttgcatacagatttgcagctagaaaaccacactcgccttccaat |
1475523 |
T |
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| Q |
218 |
gc |
219 |
Q |
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|| |
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| T |
1475522 |
gc |
1475521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 1483850 - 1483649
Alignment:
| Q |
18 |
attgagtggttccgttctgtttcaaagttattttatccccaagactcagagcaattccctcagttttacttcttactgtgatgtatccactcaatttacc |
117 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||| || || ||||||||||| |
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| T |
1483850 |
attgagcggttcccttctgtttcaaagtgattttatccccaagactcagagcaattccctgggttttacttcttattctgatataaccgctcaatttacc |
1483751 |
T |
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| Q |
118 |
atctgcttgcttttcaatgctcaaatttgccaaagcatcttcaccaaaaacactcttagcataaaggtttgcagataggaaaccacactcgccgtcctat |
217 |
Q |
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||| | |||||| |||||||||| ||| | | ||||||||| |||||||||||||| ||||| || || |||| ||| |||||||||||||| ||| || |
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| T |
1483750 |
atcggattgcttctcaatgctcacattcacaagagcatcttccccaaaaacactctttgcatacagattcgcagctagaaaaccacactcgccttccaat |
1483651 |
T |
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| Q |
218 |
gc |
219 |
Q |
| |
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|| |
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| T |
1483650 |
gc |
1483649 |
T |
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