View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_4 (Length: 420)
Name: NF10798_low_4
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 14782169 - 14781767
Alignment:
| Q |
1 |
ttggatgaaaacattaaaggggtgtctactttggagtttatagacatgactggccatttccctcagttaactgcacacctgaggttggttgaggtgctga |
100 |
Q |
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| T |
14782169 |
ttggatgaaaacattaaaggagtgtctactttggagtttatagacatgactggccattgccctcagttaactgcacacctgaggttggttgaggtgctga |
14782070 |
T |
|
| Q |
101 |
agggtattgtgggttagccttgattagtgtctcagg-acactggttagcatttttctttgtttaaataagccgggcttgtcatctagatttatcttccct |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14782069 |
agggtattgtgggttagccttgattagtgtttcagggacactggttagcatttttttttgtttaaataagtcgggcttgtcatctagatttatcttccct |
14781970 |
T |
|
| Q |
200 |
tttgtcaagagctcaattctcaagtatgtgtgattggataaaactaaaatagtttgtaataaatctatctctatatatggaaatgtatttgatggtatta |
299 |
Q |
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| T |
14781969 |
tttgtcaagagctcaattctcaagtatgtgtgattggacaaaactaaaatagtttgtaataaatctatctctatatatggaaatgtatttgatggtatta |
14781870 |
T |
|
| Q |
300 |
tgttatagtctgtgaaaaatcaattgtaaagtgtgaagttctagttttactgttgatttgaaaatatttcaacccaacaattgaacttgatggagcaatc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14781869 |
tgttatagtctgtgaaaaatcaattgtaaagtgtgaagttctagttttaccgttgatttgaaaatatttcaacccaacaattgaacttgatggagcaatc |
14781770 |
T |
|
| Q |
400 |
tat |
402 |
Q |
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| T |
14781769 |
tat |
14781767 |
T |
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