View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_40 (Length: 219)
Name: NF10798_low_40
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 5763274 - 5763457
Alignment:
| Q |
19 |
atccctcacaattctccagaggtcaaattaaaaggatcaaaataaaaaatagtatgcagagatccctcacaattctcctgaggtcaaacttgaaaaattt |
118 |
Q |
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| T |
5763274 |
atccctcacaattctccagaggtcaaattaaaaggatcaaaataaaaaatagtatgcagagatccctcacaattctcctgaggtcaaacttgaaaaattt |
5763373 |
T |
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| Q |
119 |
gactctaatctccaacatcaagccatattttgcgaaactatctgcattctgattagcttctctgtataaaatgagtccagaaat |
202 |
Q |
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| T |
5763374 |
gactctaatctccaacgtcaagccatattttgcaaaactatctgcattctgattagcttctctgtataaaatgagtccagaaat |
5763457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 5763329 - 5763361
Alignment:
| Q |
13 |
gcagagatccctcacaattctccagaggtcaaa |
45 |
Q |
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| T |
5763329 |
gcagagatccctcacaattctcctgaggtcaaa |
5763361 |
T |
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