View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_43 (Length: 207)
Name: NF10798_low_43
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 27255629 - 27255802
Alignment:
| Q |
18 |
atgctaacacaaaataatgacctaaaggccaaaagatacattatgaatcaaatatcaaaactgacatcatagagcataaagacctaatcatatactatag |
117 |
Q |
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| T |
27255629 |
atgctaacacaaaataatgacctaaaggccaaaagatacattatgaatcaaatatcaaaactgacatcatagagcataaagacctaatcatatactatag |
27255728 |
T |
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| Q |
118 |
gattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatttcatgctctatatttg |
191 |
Q |
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| T |
27255729 |
gattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatttcatgctctatatttg |
27255802 |
T |
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Target: chr4; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 21199686 - 21199782
Alignment:
| Q |
95 |
aaagacctaatcatatactataggattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatttcatgctctatatttg |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21199686 |
aaagacctaatcatatactataggattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatttcatgctctatatttg |
21199782 |
T |
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