View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_5 (Length: 407)
Name: NF10798_low_5
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 38149930 - 38149549
Alignment:
| Q |
19 |
accgatttgatccaactagtttccaaacaatcctttcttgttaaacccaattcaggaaaactctgcttcataacttggagaagtctattagctccaccaa |
118 |
Q |
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| T |
38149930 |
accgatttgatccaactagtttccaaacaatcctttcttgttaaacccaattcaggaaaactctgcttcataacttggagaagtctattagctccaccaa |
38149831 |
T |
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| Q |
119 |
gaaatagagcttggtaagaagtggttacagttctttgaccaggaacactaccattgcctggctgaatcaagactctgatgaagagattttcatcaatatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38149830 |
gaaatagagcttggtaagaagtggttacagttctttgaccaggaacactaccattgcctggctgaatcaagactctgatgaagagattttcatcaatatt |
38149731 |
T |
|
| Q |
219 |
tggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaaactgtcacagtttttggcacaggaactaat |
318 |
Q |
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| T |
38149730 |
tggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaaactgtcacagtttttggcacaggaactaat |
38149631 |
T |
|
| Q |
319 |
ttgatcttccaccagagaataactccgaagctacctcctccgcctcctcttattgcccaaaataggtcttctccctttgctt |
400 |
Q |
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| T |
38149630 |
ttgatcttccaccagagaataactccgaagctacctcctccgcctcctcttattgcccaaaataggtcttctcccattgctt |
38149549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 189 - 393
Target Start/End: Complemental strand, 38145952 - 38145748
Alignment:
| Q |
189 |
gactctgatgaagagattttcatcaatatttggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaa |
288 |
Q |
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| T |
38145952 |
gactctaatgaagagattttcatcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaa |
38145853 |
T |
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| Q |
289 |
actgtcacagtttttggcacaggaactaatttgatcttccaccagagaataactccgaagctacctcctccgcctcctcttattgcccaaaataggtctt |
388 |
Q |
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|||||||| ||| ||| |||||||| | || ||||||||||| |||| | || ||||| || ||||| || |||||||| ||||||||||| || | |
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| T |
38145852 |
actgtcactgttggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcct |
38145753 |
T |
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| Q |
389 |
ctccc |
393 |
Q |
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||||| |
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| T |
38145752 |
ctccc |
38145748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 38146122 - 38146064
Alignment:
| Q |
22 |
gatttgatccaactagtttccaaacaatcctttcttgttaaacccaattcaggaaaact |
80 |
Q |
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| T |
38146122 |
gatttgatccaactagtttcttgacaatctttccttgtcaaacccaattcaggaaaact |
38146064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 337
Target Start/End: Original strand, 11786869 - 11787016
Alignment:
| Q |
190 |
actctgatgaagagattttcatcaatatttggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaaa |
289 |
Q |
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||||| || |||||||||||||||||| |||||||||||| ||||||| ||| || || || || || ||||||||| || || || || || |||| |
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| T |
11786869 |
actctcataaagagattttcatcaatagttggtgctacttcttgccatttatgaacaatcttacttgcatcttgttctaagcttttggtaacggtaaaaa |
11786968 |
T |
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| Q |
290 |
ctgtcacagtttttggcacaggaactaatttgatcttccaccagagaa |
337 |
Q |
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| T |
11786969 |
ccgtcacggtttttggaacaggaacaagttttatcttccaccaaagaa |
11787016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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