View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10798_low_6 (Length: 405)

Name: NF10798_low_6
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10798_low_6
NF10798_low_6
[»] chr4 (10 HSPs)
chr4 (1-387)||(24894612-24894996)
chr4 (181-252)||(55520939-55521010)
chr4 (180-336)||(40197828-40197980)
chr4 (180-248)||(29010105-29010173)
chr4 (178-244)||(24799393-24799459)
chr4 (253-339)||(53711783-53711869)
chr4 (277-338)||(47533704-47533765)
chr4 (179-240)||(55521061-55521122)
chr4 (180-240)||(9675061-9675121)
chr4 (180-252)||(47533817-47533889)
[»] chr3 (3 HSPs)
chr3 (180-252)||(1699932-1700004)
chr3 (262-335)||(1700041-1700113)
chr3 (179-247)||(40362073-40362141)
[»] chr2 (7 HSPs)
chr2 (277-340)||(37210215-37210278)
chr2 (250-336)||(29927697-29927783)
chr2 (258-335)||(3256966-3257043)
chr2 (253-336)||(32978970-32979053)
chr2 (262-336)||(38342360-38342433)
chr2 (262-339)||(28814663-28814740)
chr2 (180-240)||(15333273-15333333)
[»] chr6 (7 HSPs)
chr6 (179-252)||(32549403-32549476)
chr6 (277-337)||(1038296-1038356)
chr6 (277-336)||(32549528-32549587)
chr6 (178-252)||(214734-214808)
chr6 (180-253)||(11004298-11004371)
chr6 (180-239)||(3626972-3627031)
chr6 (180-252)||(3626850-3626920)
[»] chr1 (8 HSPs)
chr1 (180-252)||(28190485-28190557)
chr1 (179-252)||(3360486-3360559)
chr1 (180-248)||(31507345-31507413)
chr1 (180-252)||(28190603-28190675)
chr1 (180-240)||(39939317-39939377)
chr1 (178-219)||(7438811-7438852)
chr1 (278-339)||(9688336-9688397)
chr1 (180-240)||(7438883-7438943)
[»] chr7 (9 HSPs)
chr7 (277-336)||(20183029-20183088)
chr7 (253-337)||(33487283-33487367)
chr7 (180-239)||(35582188-35582247)
chr7 (178-248)||(33487181-33487251)
chr7 (178-237)||(5998462-5998521)
chr7 (188-336)||(42082747-42082891)
chr7 (275-337)||(25244177-25244239)
chr7 (179-238)||(30458107-30458166)
chr7 (178-248)||(35582303-35582374)
[»] chr5 (5 HSPs)
chr5 (179-252)||(11674161-11674234)
chr5 (275-332)||(40767210-40767267)
chr5 (275-338)||(39043523-39043586)
chr5 (181-240)||(38739180-38739239)
chr5 (178-248)||(39043598-39043668)
[»] scaffold0027 (2 HSPs)
scaffold0027 (186-240)||(48578-48632)
scaffold0027 (184-248)||(48687-48751)
[»] chr8 (2 HSPs)
chr8 (180-248)||(31661518-31661586)
chr8 (180-252)||(34646283-34646355)


Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 24894996 - 24894612
Alignment:
Q  1 gaggagaaggaggaggttgggaagcagcagtacatgaagaaaattttgaaagaggagaaaatgaagaacccggtttggggtgagaagaaagaagcagcaa 100  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24894996 gaggagaagaaggaggttgggaagcaggagtacatgaagaaaattttgaaagaggagaaaatgaagaacccggtttggggtgagaagaaagaagcagcaa 24894897  T
Q  101 aataaatggtgggtgcttgaagcatccatgaaaatcaaacaaatgtgtgtattttaatttcatgaagtatgaataagaagaaaattgtttttcccacttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24894896 aataaatggtgggtgcttgaagcatccatgaaaatcaaacaaatgtgtgtatttta-tttcatgaagtatgaataagaagaaaattgtttttcccacttc 24894798  T
Q  201 acacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatccatcagcaattaactgccagtaaggttatattggtaattttgtggtgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  24894797 acacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatccatcaacaattaactgccaataaagttatattggtaattttgtggtgt 24894698  T
Q  301 ttcattgcaacctttaatgtgggaacatcaattttcaaataagaaaaacatgcactttattttactccatgtttggtctttaatagg 387  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  24894697 ttcattacaacctttgatgtgggaacatcaattttcaaataagaaaaa-atgcactttattttactccatgttcggtctttaatagg 24894612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 55520939 - 55521010
Alignment:
Q  181 aaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatc 252  Q
    |||||||||||||||||||||||||| ||||||||||||| | |||| ||||||||| || |||||| ||||    
T  55520939 aaaattgtttttcccacttcacacaaagctaagaaacaccatgaaatgacaagtttagccccaaattacatc 55521010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 336
Target Start/End: Complemental strand, 40197980 - 40197828
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatccatcagcaattaactgccagtaaggtt 279  Q
    |||||||  |||| ||||||||||||||||||||||||||  |||||| | || ||||||| ||||    ||||||| ||| |||||||||  | | |||    
T  40197980 gaaaattcctttttccacttcacacaatgctaagaaacactataaaatgataaatttaaccccaaa----atccatcggcagttaactgccgatgaagtt 40197885  T
Q  280 atattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttc 336  Q
    |||||| ||||||  |||| |||    ||||||||| ||||||||||| ||||||||    
T  40197884 atattgataatttcatggtttttatgagcaacctttgatgtgggaacaacaattttc 40197828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 29010173 - 29010105
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattc 248  Q
    ||||| || ||||| |||||||  ||||||||||||||||| |||||| |||| |||||||||||||||    
T  29010173 gaaaaatgcttttcacacttcattcaatgctaagaaacaccataaaatgacaaatttaacctcaaattc 29010105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 24799459 - 24799393
Alignment:
Q  178 aagaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaa 244  Q
    |||||||||||||||||||||||| |||| |  |||||||||| | ||| |||||||||||| ||||    
T  24799459 aagaaaattgtttttcccacttcaaacaaagtcaagaaacaccatgaaaacacaagtttaacttcaa 24799393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 53711783 - 53711869
Alignment:
Q  253 catcagcaattaactgccagtaaggttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttcaaa 339  Q
    ||||| || |||||||||  | || |||| ||||||| ||||||||||||||| |||||||||||  || || ||||||||||||||    
T  53711783 catcaacagttaactgcccatgagattatgttggtaaatttgtggtgtttcatagcaacctttaagatgagagcatcaattttcaaa 53711869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 47533765 - 47533704
Alignment:
Q  277 gttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttcaa 338  Q
    ||||||||||||| ||||||||||||| |  ||||||||||||| |||||  ||||||||||    
T  47533765 gttatattggtaaatttgtggtgtttcctaacaacctttaatgtaggaacgacaattttcaa 47533704  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 55521122 - 55521061
Alignment:
Q  179 agaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacc 240  Q
    ||||||||| ||||| ||||||| |||| ||||||||||||| | |||| ||||||||||||    
T  55521122 agaaaattgcttttcacacttcaaacaaagctaagaaacaccatgaaataacaagtttaacc 55521061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 9675121 - 9675061
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacc 240  Q
    |||||||| ||||| |||||||||||| | ||||||||||  | |||||||||||||||||    
T  9675121 gaaaattgcttttctcacttcacacaaagttaagaaacactatgaaatcacaagtttaacc 9675061  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 47533889 - 47533817
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatc 252  Q
    ||||||||  |||| |||||||| ||||||||||||||||  | |||| | || |||||||||||||| ||||    
T  47533889 gaaaattgcctttcacacttcacgcaatgctaagaaacacaattaaatgataaatttaacctcaaatttcatc 47533817  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 1699932 - 1700004
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatc 252  Q
    ||||||||| |||| |||||||||||||||||||||||||| | |||| |||| |||||||||||||||||||    
T  1699932 gaaaattgtctttcacacttcacacaatgctaagaaacaccatgaaataacaaatttaacctcaaattccatc 1700004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 1700041 - 1700113
Alignment:
Q  262 ttaactgccagtaaggttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaatttt 335  Q
    ||||||||| || || |||||||||||||||  | ||||||| | |||||||| || |||||||||||||||||    
T  1700041 ttaactgccggtgagattatattggtaatttcatagtgtttcctagcaaccttgaa-gtgggaacatcaatttt 1700113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 40362141 - 40362073
Alignment:
Q  179 agaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaatt 247  Q
    |||||||||  |||| || |||| |||||||||||||||||| |||||| | || ||||||| ||||||    
T  40362141 agaaaattgcctttcacatttcatacaatgctaagaaacaccataaaatgaaaaatttaaccccaaatt 40362073  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 340
Target Start/End: Complemental strand, 37210278 - 37210215
Alignment:
Q  277 gttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttcaaat 340  Q
    |||||||||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||    
T  37210278 gttatattggtaatttcgtggtgtttcctagcaacctttgatgtgggaacatcaattttcaaat 37210215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 29927783 - 29927697
Alignment:
Q  250 atccatcagcaattaactgccagtaaggttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttc 336  Q
    ||||||||||| |||||||||  | |||||||||||||||||| |||||||||| |  |||||||| ||||||||||| ||| ||||    
T  29927783 atccatcagcagttaactgccgatgaggttatattggtaatttcgtggtgtttcctatcaacctttgatgtgggaacaacaaatttc 29927697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 3257043 - 3256966
Alignment:
Q  258 gcaattaactgccagtaaggttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaatttt 335  Q
    |||||||| ||||  | ||||||| ||||||||||||||||||||| | ||||||||||||||||||| | |||||||    
T  3257043 gcaattaattgccgatgaggttatgttggtaattttgtggtgtttcgtagcaacctttaatgtgggaataacaatttt 3256966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 32979053 - 32978970
Alignment:
Q  253 catcagcaattaactgccagtaaggttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttc 336  Q
    |||| ||| |||||| ||| | || |||||||| ||||||||||||||||| | ||||||| | ||||||||||| ||||||||    
T  32979053 catcggcagttaactaccaatgagtttatattgataattttgtggtgtttcctagcaacctatgatgtgggaacaacaattttc 32978970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 38342360 - 38342433
Alignment:
Q  262 ttaactgccagtaaggttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttc 336  Q
    |||||||||  | |||||||||||||||||| |||||||||||| |||| |||| | ||||||||| ||||||||    
T  38342360 ttaactgccgatgaggttatattggtaatttcgtggtgtttcatagcaa-ctttgacgtgggaacaacaattttc 38342433  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 339
Target Start/End: Complemental strand, 28814740 - 28814663
Alignment:
Q  262 ttaactgccagtaaggttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttcaaa 339  Q
    ||||||| || |||| |||||||  |||||| ||||| ||||||  ||||||||||  ||||||||||||||||||||    
T  28814740 ttaactgtcaataagattatattaataatttcgtggtatttcataacaacctttaacttgggaacatcaattttcaaa 28814663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 15333333 - 15333273
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacc 240  Q
    |||||||| ||||||||||||| |||| | ||||||||| | |||||| ||||||||||||    
T  15333333 gaaaattgcttttcccacttcaaacaaagttaagaaacatcataaaatgacaagtttaacc 15333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 32549403 - 32549476
Alignment:
Q  179 agaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatc 252  Q
    ||||||||||||||| || ||||||||||||||||||||||| | |||| |||||||||||| |||||| ||||    
T  32549403 agaaaattgtttttcacatttcacacaatgctaagaaacaccattaaatgacaagtttaaccccaaatttcatc 32549476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 337
Target Start/End: Complemental strand, 1038356 - 1038296
Alignment:
Q  277 gttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttca 337  Q
    ||||||||||||||||||| |||||||||  |||||||| |||||||||||||||||||||    
T  1038356 gttatattggtaattttgttgtgtttcataacaacctttgatgtgggaacatcaattttca 1038296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 32549528 - 32549587
Alignment:
Q  277 gttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttc 336  Q
    |||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||    
T  32549528 gttatattggtaatttcgtggtgtttcatagcaacttttgatgtgggaacatcaattttc 32549587  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 214734 - 214808
Alignment:
Q  178 aagaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatc 252  Q
    |||||||||||||||||||||||| ||||||||||||||||   | |||| |||| |||||| ||||||| ||||    
T  214734 aagaaaattgtttttcccacttcatacaatgctaagaaacattatgaaatgacaaatttaacttcaaattacatc 214808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 11004371 - 11004298
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatcc 253  Q
    |||||||  |||| ||||||||||||| |||||||||||   |||||| |||||||||||| ||||||||||||    
T  11004371 gaaaatttctttttccacttcacacaaagctaagaaacattataaaatgacaagtttaaccccaaattccatcc 11004298  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 3627031 - 3626972
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaac 239  Q
    |||||||||||||||||| ||| |||| | ||||||||||| |||||| |||||||||||    
T  3627031 gaaaattgtttttcccacatcaaacaaagttaagaaacaccataaaattacaagtttaac 3626972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 3626850 - 3626920
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatc 252  Q
    |||||||| |||||||||||||||||  | ||| ||||||| | |||| |||||||||||  |||||||||||    
T  3626850 gaaaattgcttttcccacttcacaca--gttaaaaaacaccatgaaataacaagtttaactgcaaattccatc 3626920  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 28190485 - 28190557
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatc 252  Q
    |||||||| |||||||||||||||||| || |||||||||| | |||| ||||||||||||||||||| ||||    
T  28190485 gaaaattgcttttcccacttcacacaaagcaaagaaacaccatgaaatgacaagtttaacctcaaatttcatc 28190557  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 3360559 - 3360486
Alignment:
Q  179 agaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatc 252  Q
    |||||||||||||| |||||||| |||| | ||||||||||| | |||| |||| ||||| |||||||||||||    
T  3360559 agaaaattgttttttccacttcaaacaaagttaagaaacaccatgaaatgacaattttaatctcaaattccatc 3360486  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 31507413 - 31507345
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattc 248  Q
    ||||||||||||||||| |||||||||  |||||||||||| | |||| | ||||||||||| ||||||    
T  31507413 gaaaattgtttttcccatttcacacaaaactaagaaacaccatgaaatgataagtttaaccttaaattc 31507345  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 28190675 - 28190603
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatc 252  Q
    |||||||| ||||||||||||| |||   |||||||||| | | |||| ||||||||||||||||||| ||||    
T  28190675 gaaaattgcttttcccacttcaaacagaactaagaaacaacattaaatgacaagtttaacctcaaatttcatc 28190603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 39939377 - 39939317
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacc 240  Q
    ||||||| |||||||||||||| |||| ||||||||||||| | |||| | ||||||||||    
T  39939377 gaaaattatttttcccacttcaaacaaagctaagaaacaccatgaaatgataagtttaacc 39939317  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 7438811 - 7438852
Alignment:
Q  178 aagaaaattgtttttcccacttcacacaatgctaagaaacac 219  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  7438811 aagaaagttgtttttcccacttcaaacaaagctaagaaacac 7438852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 9688336 - 9688397
Alignment:
Q  278 ttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttcaaa 339  Q
    ||||||| ||||||| ||||||||||||  | ||| || || ||||||||||||||||||||    
T  9688336 ttatattagtaatttcgtggtgtttcatatccaccattcatatgggaacatcaattttcaaa 9688397  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 7438943 - 7438883
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacc 240  Q
    |||||||||||||||||||||| |||| ||||| ||| ||  | |||| ||||||||||||    
T  7438943 gaaaattgtttttcccacttcatacaaagctaaaaaatactatgaaatgacaagtttaacc 7438883  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 20183088 - 20183029
Alignment:
Q  277 gttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttc 336  Q
    ||||||||| |||||||||||||||| || ||||||||||| ||||||||||||||||||    
T  20183088 gttatattgataattttgtggtgttttatagcaacctttaacgtgggaacatcaattttc 20183029  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 33487283 - 33487367
Alignment:
Q  253 catcagcaattaactgccagtaaggttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttca 337  Q
    |||| ||| |||||||||  || |||||||||| |||||| |||||||||||| |||| |||| ||| |||||||||||||||||    
T  33487283 catcggcagttaactgcccatagggttatattgataatttcgtggtgtttcatagcaatctttgatgcgggaacatcaattttca 33487367  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 35582188 - 35582247
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaac 239  Q
    |||||||||||||||||||||| |||| ||||||||||||||| |||| | |||||||||    
T  35582188 gaaaattgtttttcccacttcaaacaaagctaagaaacaccgtgaaataataagtttaac 35582247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 33487181 - 33487251
Alignment:
Q  178 aagaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattc 248  Q
    |||||||||| ||||| ||||| || ||||||||||||||||| |||||| |||| |||||| ||||||||    
T  33487181 aagaaaattgcttttcacactttactcaatgctaagaaacaccataaaataacaaatttaacttcaaattc 33487251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 5998521 - 5998462
Alignment:
Q  178 aagaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagttta 237  Q
    ||||||||||||||||||| |||| |||| ||||||||||| | |||||| |||||||||    
T  5998521 aagaaaattgtttttcccatttcaaacaaagctaagaaacatcataaaatgacaagttta 5998462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 336
Target Start/End: Original strand, 42082747 - 42082891
Alignment:
Q  188 tttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatccatcagcaattaactgccagtaaggttatattggt 287  Q
    |||||| |||||||  | ||||||||||||||| | |||| |||| |||||||||||||| |||| |    || || ||| ||| |  | ||||||||||    
T  42082747 tttttcacacttcattcgatgctaagaaacaccatgaaatgacaaatttaacctcaaatttcatcga----cagtttactaccaatgggattatattggt 42082842  T
Q  288 aattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttc 336  Q
    ||||| |||||||||||| |||| || | ||||||||||| | ||||||    
T  42082843 aatttcgtggtgtttcatagcaatctatgatgtgggaacaacgattttc 42082891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 25244239 - 25244177
Alignment:
Q  275 aggttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttca 337  Q
    |||||||||||||| |||| ||||||||| ||||| ||||| ||||||||||| |||| ||||    
T  25244239 aggttatattggtatttttctggtgtttccttgcatcctttgatgtgggaacagcaatcttca 25244177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 30458107 - 30458166
Alignment:
Q  179 agaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaa 238  Q
    ||||||||||||||||||||||| |||| |||| |||||||  | |||| ||||||||||    
T  30458107 agaaaattgtttttcccacttcaaacaaagctacgaaacactatgaaatgacaagtttaa 30458166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 35582374 - 35582303
Alignment:
Q  178 aagaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaag-tttaacctcaaattc 248  Q
    |||||||||| |||||||||||||||| | ||||||||||||  | |||| | ||| |||||||||||||||    
T  35582374 aagaaaattgcttttcccacttcacacgaagctaagaaacactatgaaatgataagttttaacctcaaattc 35582303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 11674161 - 11674234
Alignment:
Q  179 agaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatc 252  Q
    |||||||||||||| ||||   |||||| ||||||||| ||| |||||| ||||||||||||||||||||||||    
T  11674161 agaaaattgttttttccaccgtacacaaggctaagaaataccataaaataacaagtttaacctcaaattccatc 11674234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 40767210 - 40767267
Alignment:
Q  275 aggttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaat 332  Q
    |||||||||||||| |||| ||||||||||| ||| ||||| ||||||||||||||||    
T  40767210 aggttatattggtatttttctggtgtttcatagcaccctttgatgtgggaacatcaat 40767267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 39043586 - 39043523
Alignment:
Q  275 aggttatattggtaattttgtggtgtttcattgcaacctttaatgtgggaacatcaattttcaa 338  Q
    ||||||| ||||||||||| ||||||||| | ||||| ||| |||||||||||| |||||||||    
T  39043586 aggttattttggtaattttatggtgtttcctagcaacttttgatgtgggaacattaattttcaa 39043523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 38739239 - 38739180
Alignment:
Q  181 aaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacc 240  Q
    ||||||||||||| ||| |||||||| ||||||||| ||| |||||| | ||||||||||    
T  38739239 aaaattgtttttctcacctcacacaaagctaagaaataccataaaatgataagtttaacc 38739180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 39043668 - 39043598
Alignment:
Q  178 aagaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattc 248  Q
    ||||||||||  |||  |||||||||||||||||||||||||| | |||  |||| |||||| ||||||||    
T  39043668 aagaaaattgccttttacacttcacacaatgctaagaaacaccatgaaaggacaaatttaacgtcaaattc 39043598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 48578 - 48632
Alignment:
Q  186 tgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacc 240  Q
    |||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||    
T  48578 tgtttttcccacttcaaacaatgctaaggaacaccataaaataacaagtttaacc 48632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 48751 - 48687
Alignment:
Q  184 attgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattc 248  Q
    |||| |||||| |||||||||| |||||||||| ||  | |||| | ||||||||||||||||||    
T  48751 attgcttttccaacttcacacattgctaagaaatactatgaaatgataagtttaacctcaaattc 48687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 31661518 - 31661586
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattc 248  Q
    |||||||||||||| || ||||| ||||| ||||||||||  | |||| |||| |||||||||||||||    
T  31661518 gaaaattgtttttcgcatttcactcaatgataagaaacactatgaaatgacaattttaacctcaaattc 31661586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 34646355 - 34646283
Alignment:
Q  180 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattccatc 252  Q
    ||||||||| |||  |||||||||||||||||| ||||||| | |||| |||| ||||| | |||||||||||    
T  34646355 gaaaattgtcttttacacttcacacaatgctaataaacaccatgaaatgacaaatttaatcccaaattccatc 34646283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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