View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10798_low_7 (Length: 391)
Name: NF10798_low_7
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 14 - 390
Target Start/End: Complemental strand, 936515 - 936138
Alignment:
| Q |
14 |
catgttcttcagtaactgctcctctttttctttctctcaacccttgcattcttcttcttcctcattagtactattctcacgatttgaaatacacttcccc |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
936515 |
catgttcttcagtaactgctcttctttttctttctctcaacccttgcattcttcttcttcctcattagtactattctcacgatttgaaatacacttcccc |
936416 |
T |
|
| Q |
114 |
ataaccttaaaatagatatcctcatatgtttgtgtatctaaaccctcctcgtcaatcattatatgtatagcatcaaatttagcatcccaggcttcattct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
936415 |
ataaccttaaaatagatatcctcatatgtttgtgtatctaaaccctccttgtcaatcattatatgtatagcatcaaatttagcatcccaggcttcatgct |
936316 |
T |
|
| Q |
214 |
ttccgagtgagtgattcctggatgttaaaaaattcaaatacgcacataaacaaaaattgtgtaacttgtgtcaaaagcattgctaaaagccccataaacg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
936315 |
ttccgagtgagtgattcctggatgttaagaaattcaaatacgcacataaacaaaaattctgtaacttgtgtcaaaagcattgctaaaagccccataaacg |
936216 |
T |
|
| Q |
314 |
gctttgccttcacggcttcaccccatgaggaagctttctctttttgcattctactttttgctcct-atgcttctcctc |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
936215 |
gctttgccttcacggcttcaccccatgaggaagctttctctttttgcattctactttttgctcctcttgcttctcctc |
936138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University