View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_8 (Length: 374)
Name: NF10798_low_8
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 21 - 367
Target Start/End: Complemental strand, 46538595 - 46538249
Alignment:
| Q |
21 |
ctttgttgacacattaaatcacactactgagctgcgtcgacaaacattgccatctgcagaggatgaaaacgcctctaattggaatgacatgtgcacattt |
120 |
Q |
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| T |
46538595 |
ctttgttgacacattaaatcacactactgagctgcgtcgacaaacattggcatctgcagaggatgaaaacgcctctaattggaatgacatgtgcacattt |
46538496 |
T |
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| Q |
121 |
aatggaaaatagtgaatgagatagtgatcaacaaagagacaacagatctatataaaaatactatccaatccggtccaataggtaacagtacaaaaatcca |
220 |
Q |
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| T |
46538495 |
aatggaaaatagtgaatgagatagtgatcaacaaagagacaacagatctatataaaaatactatccaatccagtccaataggtaacagtacaaaaatcca |
46538396 |
T |
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| Q |
221 |
aacaaaggaaaatcaagaatgtaactcatcaatacacttatgttcaaacagtgatgaagtagcataaacttcaaaccatacatacaagtacaacaaacac |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46538395 |
aacaaaggaaaatcaagaatgtaactcatcaatacacttatgttcaaacagtgatgaagtagcataaacttcaaaccatacatacaagtacaacaaacac |
46538296 |
T |
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| Q |
321 |
aataataaataaaccatataccattaatagatgctcccttcatctca |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46538295 |
aataataaataaaccatataccattaatagatgctccctccatctca |
46538249 |
T |
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