View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10798_low_9 (Length: 352)
Name: NF10798_low_9
Description: NF10798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10798_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 5 - 337
Target Start/End: Original strand, 38350966 - 38351298
Alignment:
| Q |
5 |
tgattaactgagtacatactaatattatatgacatatatttaattgattatgcaggatgcatgcagatgctttctcattgagagtggtttcgcgctgttc |
104 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||| || ||||| |
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| T |
38350966 |
tgattaattgagtacatgctaatattatatgacatatatttaatagattatgcgggatgcatgcatatactttctcattgagagtggtttcacgttgttc |
38351065 |
T |
|
| Q |
105 |
gttgcatttctaatcaatgttgcaatgatttatgtgactggtactgtttgcaaagctgatgatacttctggagagaatactgatcgttgcaatgatatta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
38351066 |
gttgcatttctaatcaatgttgcaatgatttatgtgactggtactgcttgcaaagctgatgatatttctggagagaatgctgatcgttgcaatgatatta |
38351165 |
T |
|
| Q |
205 |
cccttgactttgcttctttcattctcctagtttctaatttagttcaatttgcaactattatggtcaaagcatgatattaagtttaatcctagttaagtaa |
304 |
Q |
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||||| ||| |||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38351166 |
cccttaactctgcttctttccttctccaggttcctaatttagttcactttgcaactattatggtcaaagcatgatattaagtttaatcatagttaagtaa |
38351265 |
T |
|
| Q |
305 |
ttatgtacttctcacgtgtgtagttttgatgtc |
337 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
38351266 |
ttatgtacatctcacgtgtgtagttttgatgtc |
38351298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 340
Target Start/End: Original strand, 4940413 - 4940741
Alignment:
| Q |
8 |
ttaactgagtacatactaatattatatgacatatatttaattgattatgcaggatgcatgcagatgctttctcattgagagtggtttcgcgctgttcgtt |
107 |
Q |
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| T |
4940413 |
ttaattgagtacatactaatattatatgacatatattcaattgattacgcaggatgcatgcaaatactttctaattgagagtggtttcgcg-------tt |
4940505 |
T |
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| Q |
108 |
gcatttctaatcaatgttgcaatgatttatgtgactggtactgtttgcaaagctgatgatacttctggagagaatactgatcgttgcaatgatattaccc |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||| | |
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| T |
4940506 |
gcatttctaatcaatgttgcaatgatttttgtgactggtactgtttacaaagctgatgatatttctgaagagaatgctgatcgttgcaatgatattactc |
4940605 |
T |
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| Q |
208 |
ttgactttgcttctttcattctcctagtttctaatttagttcaatttgcaactattatggtcaaagcatgatatta---agtttaatcctagttaagtaa |
304 |
Q |
| |
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|| ||| |||||||||| |||||| ||| |||||||| |||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4940606 |
ttaactctgcttctttccttctccaggttcctaatttacttcactctccaactattatggtcaaagcatgatattaattagtttaatcctagttaagtaa |
4940705 |
T |
|
| Q |
305 |
ttatgtacttctcacgtgtgtagttttgatgtccat |
340 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
4940706 |
ttatgtacatctcacgtgtgtagttttgatgtccat |
4940741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 172 - 334
Target Start/End: Original strand, 21311662 - 21311824
Alignment:
| Q |
172 |
ctggagagaatactgatcgttgcaatgatattacccttgactttgcttctttcattctcctagtttctaatttagttcaatttgcaactattatggtcaa |
271 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||| |||| ||||||||||||| |||||||||||||||||||| |
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| T |
21311662 |
ctggagagaatgctgatcgttgcaatgatattacccttaactctgcttctttccttctccaagttcctaatttagttcagtttgcaactattatggtcaa |
21311761 |
T |
|
| Q |
272 |
agcatgatattaagtttaatcctagttaagtaattatgtacttctcacgtgtgtagttttgat |
334 |
Q |
| |
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|
| T |
21311762 |
agcatgatattaagtttaatcctagttaagtaattatgtacatctcacgtgtgtagttttgat |
21311824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 21311525 - 21311665
Alignment:
| Q |
5 |
tgattaactgagtacatactaatattatatgacatatatttaattgattatgcaggatgcatgcagatgctttctcattgagagtggtttcgcgctgttc |
104 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| || ||||| |
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| T |
21311525 |
tgattaattgagtacatactaatattatatgacatatattgaattgattatgcaggacgcatgcagatactttctcattgagagtggtttcacgatgttc |
21311624 |
T |
|
| Q |
105 |
gttgcatttctaatcaatgttgcaatgatttatgtgactgg |
145 |
Q |
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| T |
21311625 |
gttgcatttctgatcaatgttgcaatgatttctgtgactgg |
21311665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 337
Target Start/End: Complemental strand, 40126094 - 40125759
Alignment:
| Q |
5 |
tgattaactgagtacatactaatattatatgacatatattt--aattgattatgcaggatgcatgcagatgctttctcattgagagtggtttcgcgctgt |
102 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
40126094 |
tgattaattgagtacatcctaatattatatgacatatatttttaattgattatgcaggatgcatgcagatactttctcattgagagtggtttcgcgttgt |
40125995 |
T |
|
| Q |
103 |
tcgttgcatttctaatcaatgttgcaatgatttatgtgactggtactgtttgcaaagctgatgatacttctggagagaatactgatcgttgcaatgatat |
202 |
Q |
| |
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| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
40125994 |
ttgttgcatttctaatcaatgttgcaatgatttctgtgactggcactgtttgcaaggctgatgatatttctggagagaatgttgatcgttgcaatgatat |
40125895 |
T |
|
| Q |
203 |
tacccttgactttgcttctttcattctcctagtttctaatttagttc-aatttgcaactattatggtcaaagcatgatattaagtttaatcctagttaag |
301 |
Q |
| |
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||||||| ||| ||||||||| |||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40125894 |
tacccttaactccgcttctttccttctccaggttcctaatttagttcgcatttgcaactattatggtcaaagcatgatattaagtttaatcctaattaag |
40125795 |
T |
|
| Q |
302 |
taattatgtacttctcacgtgtgtagttttgatgtc |
337 |
Q |
| |
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|| ||| ||| |||||| |||||| |||||||||| |
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|
| T |
40125794 |
caagtatttacatctcacttgtgtaattttgatgtc |
40125759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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