View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10799_high_1 (Length: 372)
Name: NF10799_high_1
Description: NF10799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10799_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 48484621 - 48484250
Alignment:
| Q |
1 |
caaaggtatagtcctgtagtgttgtgtgtaccgtgtcttcatatctccataatacttctgcgcttctttctcatttttgaaataacaaaacaaatttctt |
100 |
Q |
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| T |
48484621 |
caaagatatagtcctgcagtgttgtgtgtaccgtgtcttcatatctccataatatttctgcgcttctttctcatttttgaaataacaaaacaaatttctt |
48484522 |
T |
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| Q |
101 |
cagatcacggaacacaatccccaagctggaattcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatatgaact |
200 |
Q |
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| T |
48484521 |
cagatcacggaacacaatccccaagctggaattcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatatgaact |
48484422 |
T |
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| Q |
201 |
tttacatactgaaacttccatttcttgtacatgatcaggtcttatggtgcatttcagtctcatgttatctttcaaatacatttttgaaatggagaaactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
48484421 |
tttacatactgaaacttccatttcttgtacatgatcaggtcttatggtacatttcagtcttatgttctctttcaaatacatttttgaaatggagaaactt |
48484322 |
T |
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| Q |
301 |
agtttacttttactttattgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48484321 |
agtttacttttactttattgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgc |
48484250 |
T |
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