View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10799_high_2 (Length: 323)
Name: NF10799_high_2
Description: NF10799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10799_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 43315487 - 43315784
Alignment:
| Q |
10 |
agaagaactaaaaacgttagaaaaactccacacaagcctcaaaaactcacacgaaaagagcaaaaccctacacagcgcacaagcggtgaaggagcttcat |
109 |
Q |
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| T |
43315487 |
agaagaactaaaaacgttagaaaaactccacacaagcctcaaaaactcacacgaaaagagcaaaaccctacacagcgcacaagcggtgaaggagcttcgt |
43315586 |
T |
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| Q |
110 |
tctgccatggattccgacgttactatctctctgaagaaagcgagactcattaaggttcggttggagtcgcttgaccgatctaatgaagcaagccggagtt |
209 |
Q |
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| T |
43315587 |
tctgccatggattccgacgttactatctctctgaagaaagcgagactcattaaggttcggttggagtcgcttgaccggtctaacgaagcaagccggagtt |
43315686 |
T |
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| Q |
210 |
tgccggactgtggaccgggttcgtcctcggatcgaacacggttggcggtggtgagtggtttgaggaagaatttgaaagattcgatggagagttttaat |
307 |
Q |
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| T |
43315687 |
tgccggactgtggaccgggttcatcctcggatcgaacacggttggcggtggtgagtggtttgaggaagaatttgaaagattcgatggagagttttaat |
43315784 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 24716175 - 24716123
Alignment:
| Q |
255 |
cggtggtgagtggtttgaggaagaatttgaaagattcgatggagagttttaat |
307 |
Q |
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| T |
24716175 |
cggtggtgaatggattgaagaagaagttgaaggattctatggagagttttaat |
24716123 |
T |
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