View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10799_low_1 (Length: 555)
Name: NF10799_low_1
Description: NF10799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10799_low_1 |
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| [»] scaffold0097 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 14 - 537
Target Start/End: Complemental strand, 48484270 - 48483746
Alignment:
| Q |
14 |
atggacatcagagagatgtgcgatttgcagatgggtagaagattgggaagataacaagattattatatgtaacaggtgctataatcatcgt-catgattt |
112 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48484270 |
atggacaacagagagatgtgcgatttgcagatgggtagaagattgggaagataacaagattattatatgtaacaggtgctataatcatcgttcatgattt |
48484171 |
T |
|
| Q |
113 |
ccatccccaagttgtaaagttattacagatattttgaaattctctttctgatttacaaaactttaaaggatcaaaaatgaattacttcacgtgcatcaag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48484170 |
ccatccccaagttgtaaagttattacagatattttgaaattctctttctgatttacaaaactttaaaggatcaaacgtgaattacttcacgtgcatcaag |
48484071 |
T |
|
| Q |
213 |
agtgctaagttgcagttcatttgcagatgccaagttgctgttcaccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48484070 |
agtgctaagttgcagttcatttgcagatgccaagttgctgttcaccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagag |
48483971 |
T |
|
| Q |
313 |
tgtgtgaaactccagatgttgaaagagagtgctgcctctgtccagtaaaaggcatgtcatctacatttaatcttttctttggtctgactgtttttgctgt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48483970 |
tgtgtgaaactccagatgttgaaagagagtgctgcctctgtccagtaaaaggcatgtcatctacatttaatcttttctttggtctgactgtttttgctgt |
48483871 |
T |
|
| Q |
413 |
attattacattatatcaaattcttcaggaagtagtaacttatggatccaccgcaataattcttcagtgagaaatatgcaattttccattcatatcatgat |
512 |
Q |
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| T |
48483870 |
attattacattatatcaaattcttcaggaagtagtaacttatggatccaccgcaataattcttcagtgagaaatatgcaattttccattcatatcatgat |
48483771 |
T |
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| Q |
513 |
tggcttgactcaatcacgtactaac |
537 |
Q |
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| T |
48483770 |
tggcttgactcgatcacgtactaac |
48483746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 234 - 364
Target Start/End: Original strand, 10036530 - 10036660
Alignment:
| Q |
234 |
tgcagatgccaagttgctgttcaccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttg |
333 |
Q |
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|||||||||||| | || || ||||| || ||||||||||||||| |||| || ||||||||||| ||||| || ||||| || ||||| || ||||||| |
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| T |
10036530 |
tgcagatgccaaatagcagtccaccaggaatgctatggtgcaaagcatgtccaggattttacttcttgggtatgcagagtatgcgaaacccctgatgttg |
10036629 |
T |
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| Q |
334 |
aaagagagtgctgcctctgtccagtaaaagg |
364 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
10036630 |
aaagagagtgctgcctttgtccagtaaaagg |
10036660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 255 - 363
Target Start/End: Original strand, 10156 - 10264
Alignment:
| Q |
255 |
caccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtc |
354 |
Q |
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|||||||| |||||||||||| || ||||||| |||||||||| ||||||| |||||| || |||||||| ||||||||||||||||| ||||| |||| |
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| T |
10156 |
caccaagaatgctatggtgcagagcatgttcaggattttacttattgggtttctagagtatgcgaaactcctgatgttgaaagagagtgttgcctttgtc |
10255 |
T |
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| Q |
355 |
cagtaaaag |
363 |
Q |
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||||||||| |
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| T |
10256 |
cagtaaaag |
10264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 257 - 371
Target Start/End: Original strand, 1176 - 1289
Alignment:
| Q |
257 |
ccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtcca |
356 |
Q |
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|||||| |||||||||||| || ||||||| ||||||||||| ||| || |||||| || |||||||| ||||||||||||||||| ||||| ||| || |
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| T |
1176 |
ccaagaatgctatggtgcagagcatgttcatgattttacttcttggattc-tagagtatgcgaaactcctgatgttgaaagagagtgttgcctttgtaca |
1274 |
T |
|
| Q |
357 |
gtaaaaggcatgtca |
371 |
Q |
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|||||||||| |||| |
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| T |
1275 |
gtaaaaggcacgtca |
1289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 1475 - 1371
Alignment:
| Q |
258 |
caagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtccag |
357 |
Q |
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||||| |||||||||||||| ||||||||||||||||||| || |||| |||||| | |||||| | ||||||||||||| || | ||| ||||||| |
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| T |
1475 |
caagaatgctatggtgcaaaatatgttcaagattttacttcttgagtttttagagtattcgaaacttctaatgttgaaagagattgtttcctttgtccag |
1376 |
T |
|
| Q |
358 |
taaaa |
362 |
Q |
| |
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||||| |
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| T |
1375 |
taaaa |
1371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 10433 - 10391
Alignment:
| Q |
255 |
caccaagagtgctatggtgcaaagaatgttcaagattttactt |
297 |
Q |
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| T |
10433 |
caccaagaatactatggtgcaaagcatgttcaagattttactt |
10391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 255 - 363
Target Start/End: Original strand, 20706082 - 20706190
Alignment:
| Q |
255 |
caccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtc |
354 |
Q |
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|||||||| |||||||||||| || ||||||| |||||||||| ||||||| |||||| || |||||||| ||||||||||||||||| ||||| |||| |
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| T |
20706082 |
caccaagaatgctatggtgcagagcatgttcaggattttacttattgggtttctagagtatgcgaaactcctgatgttgaaagagagtgttgcctttgtc |
20706181 |
T |
|
| Q |
355 |
cagtaaaag |
363 |
Q |
| |
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||||||||| |
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| T |
20706182 |
cagtaaaag |
20706190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 42559372 - 42559287
Alignment:
| Q |
255 |
caccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagaga |
340 |
Q |
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|||||||| ||||||||||||||| ||||||| ||||||||||| | ||||||||||| | ||||||||| |||||||||||||| |
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| T |
42559372 |
caccaagaatgctatggtgcaaagcatgttcaggattttacttcttaggtttgtagagcatttgaaactcctgatgttgaaagaga |
42559287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 338
Target Start/End: Original strand, 20856991 - 20857074
Alignment:
| Q |
255 |
caccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaaga |
338 |
Q |
| |
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|||||||| |||||||||||| || |||||| ||||||||||| ||||||| |||||| || ||||||| ||||||||||| |
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| T |
20856991 |
caccaagaatgctatggtgcagagcatgttctggattttacttcttgggtttctagagtatgcgaaactcttaatgttgaaaga |
20857074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 20706359 - 20706317
Alignment:
| Q |
255 |
caccaagagtgctatggtgcaaagaatgttcaagattttactt |
297 |
Q |
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|||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
20706359 |
caccaagaatactatggtgcaaagcatgttcaagattttactt |
20706317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 20857255 - 20857197
Alignment:
| Q |
255 |
caccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagt |
313 |
Q |
| |
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|||||||| || |||||||||||| ||| ||||||||||||||| || |||| |||||| |
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|
| T |
20857255 |
caccaagaatgttatggtgcaaagcatggtcaagattttacttcttgagtttttagagt |
20857197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 41529109 - 41529049
Alignment:
| Q |
249 |
gctgttcaccaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgta |
309 |
Q |
| |
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|||||||||||||| |||||||| ||||| ||||||| ||| ||||| |||||||| |||| |
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| T |
41529109 |
gctgttcaccaagaatgctatggagcaaaaaatgttcgagactttacatcctgggtctgta |
41529049 |
T |
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