View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10799_low_13 (Length: 227)
Name: NF10799_low_13
Description: NF10799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10799_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4885324 - 4885098
Alignment:
| Q |
1 |
gcagcatcaaagcaagtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaagatggcggagttgttcctaagat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4885324 |
gcagcatcaaagcaagtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaagatggcggtgttgttcctaagat |
4885225 |
T |
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| Q |
101 |
cgttgttgtccctcccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctccctacaccgccaccaccggataaaaataatcaccgtcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4885224 |
cgttgttgtccctcccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctccctacgccgccaccaccggataaaaataatcaccgtcat |
4885125 |
T |
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| Q |
201 |
agcaaaaactcgtcggtaagaaagaaa |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4885124 |
agcaaaaactcgtcggtaagaaagaaa |
4885098 |
T |
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