View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10799_low_2 (Length: 496)
Name: NF10799_low_2
Description: NF10799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10799_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Original strand, 5549524 - 5550010
Alignment:
| Q |
8 |
ggttaataatcttcaatgtgttatgactatataaatactatgattgacatctttgacatgaaattgaaaatggtagaatcatgcttatgtaagaattgac |
107 |
Q |
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| T |
5549524 |
ggttaataatcttcaatgtgttatgactatataaatactatgattgacacctttgacatgaaattgaaaatggtagaatcatgcttatgtaagaactgac |
5549623 |
T |
|
| Q |
108 |
aaccagaattcatagaaaggtaaagtataaacccaataaatcagattagtaaagtagtaaaaggtannnnnnnnaatcatttctttgctaatttcgtcct |
207 |
Q |
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| T |
5549624 |
aaccagaattcatagaaaggtaaagtataaacccaataaatcagattagtaaagtagtaaaaggtattttttttaatcatttctttgctaatttcgtcct |
5549723 |
T |
|
| Q |
208 |
agtaattttgatttaatttactcaacctaacacttacacgcatgtttttatgtgtgtgaaaattgaaaacatatacatcaatgatttgatatactcaaca |
307 |
Q |
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| T |
5549724 |
agtaattttgatttaatttactcaacctaacacttacacgcatgtttttatgtgtgtgaaaattgaaaacatatacatcaatgatttgatatactcaaca |
5549823 |
T |
|
| Q |
308 |
gctccagttatgatgaatttacaaaatcattttgatgacaaattggatacattttgattttgtcaagtttaatatatttaa----------aagttttga |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5549824 |
gctccagttatgatgaatttacaaaatcattttgatgacaaattggatacattttgattttgtcaagtttaatatatttaaaagttttgtgaagttttga |
5549923 |
T |
|
| Q |
398 |
ttttgacatgaaattgaaagtcctgtggcttaatatgtttgttgcgtatgaaacattacaaaggtcgtctcagagcagaacatgctgac |
486 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5549924 |
ttttgacatgaaattgaaagtcttgtggctt--tatgtttgttgcgtatgaaacattacaaaggtcgtctcagagcagaacatgctgac |
5550010 |
T |
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