View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10799_low_3 (Length: 376)
Name: NF10799_low_3
Description: NF10799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10799_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 30842949 - 30842590
Alignment:
| Q |
1 |
aatttccgttttctggactacaatgttatgatttcggggtcttagagatattgagggcgtaaagagaaattctacactg-ttaagcataacatccacata |
99 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
30842949 |
aatttccgttttctaggctacaatgttatgatttcggggtcttagagatattgaaggcgcaaagagaaattctacactggttaagcataacatccaca-- |
30842852 |
T |
|
| Q |
100 |
actatagtaatataaccttcaatttcttttgaaaaatagacattctcaacttcaacaaatttaatcacaacaa---tatatgtcatggcaaatatttgtc |
196 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
30842851 |
actatagtaatacaaccttcaatttcttttgaaaaatagagattctcaacttcaacaaatttattcacaacaacaatatatgtcatggcaaatatttgtc |
30842752 |
T |
|
| Q |
197 |
agcaatttttctaccaatataattgaattgatttacctgaagtggatgcatgtttcatcgaggagttatccactatacttggtttggatgataacctgtg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30842751 |
agcaatttttctaccaatataattgaattgatttacctgaagtggatgcatgtttcatcgaggagttatccactatacttggtttggatgataacttgtg |
30842652 |
T |
|
| Q |
297 |
tccaattgcataagcatcagtattaaacttgaatgtagacatagccttattattcaccaaat |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30842651 |
tccaattgcataagcatcagtattaaacttgaatgtagacatagccttattattcaccaaat |
30842590 |
T |
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