View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10799_low_4 (Length: 372)
Name: NF10799_low_4
Description: NF10799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10799_low_4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 48484621 - 48484250
Alignment:
| Q |
1 |
caaaggtatagtcctgtagtgttgtgtgtaccgtgtcttcatatctccataatacttctgcgcttctttctcatttttgaaataacaaaacaaatttctt |
100 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48484621 |
caaagatatagtcctgcagtgttgtgtgtaccgtgtcttcatatctccataatatttctgcgcttctttctcatttttgaaataacaaaacaaatttctt |
48484522 |
T |
|
| Q |
101 |
cagatcacggaacacaatccccaagctggaattcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatatgaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48484521 |
cagatcacggaacacaatccccaagctggaattcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatatgaact |
48484422 |
T |
|
| Q |
201 |
tttacatactgaaacttccatttcttgtacatgatcaggtcttatggtgcatttcagtctcatgttatctttcaaatacatttttgaaatggagaaactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48484421 |
tttacatactgaaacttccatttcttgtacatgatcaggtcttatggtacatttcagtcttatgttctctttcaaatacatttttgaaatggagaaactt |
48484322 |
T |
|
| Q |
301 |
agtttacttttactttattgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgc |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48484321 |
agtttacttttactttattgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgc |
48484250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University