View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10799_low_8 (Length: 270)

Name: NF10799_low_8
Description: NF10799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10799_low_8
NF10799_low_8
[»] chr2 (4 HSPs)
chr2 (18-255)||(38968768-38969005)
chr2 (29-196)||(16078252-16078419)
chr2 (132-210)||(33483062-33483140)
chr2 (119-214)||(44690923-44691018)
[»] chr7 (2 HSPs)
chr7 (23-228)||(6229938-6230143)
chr7 (123-214)||(12829332-12829427)
[»] chr4 (5 HSPs)
chr4 (18-255)||(55351258-55351495)
chr4 (132-216)||(47551280-47551364)
chr4 (124-214)||(8506535-8506625)
chr4 (76-156)||(29080975-29081055)
chr4 (121-165)||(13852276-13852320)
[»] chr5 (4 HSPs)
chr5 (18-255)||(3680390-3680627)
chr5 (74-236)||(29299552-29299714)
chr5 (91-155)||(15194927-15194991)
chr5 (132-183)||(16648482-16648533)
[»] chr8 (4 HSPs)
chr8 (23-214)||(44682241-44682432)
chr8 (83-212)||(25659758-25659887)
chr8 (103-156)||(29577065-29577118)
chr8 (122-236)||(4901640-4901754)
[»] chr1 (4 HSPs)
chr1 (74-214)||(23295255-23295395)
chr1 (127-217)||(43458078-43458168)
chr1 (122-207)||(40197970-40198055)
chr1 (125-214)||(40388080-40388169)
[»] chr3 (2 HSPs)
chr3 (76-156)||(48721356-48721436)
chr3 (103-214)||(49454620-49454731)
[»] chr6 (3 HSPs)
chr6 (137-214)||(9295836-9295913)
chr6 (156-214)||(17776456-17776514)
chr6 (137-214)||(9288892-9288969)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 38969005 - 38968768
Alignment:
Q  18 aaaggcatcctaagagggaaataggacgaaactccttcaaagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcgg 117  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  38969005 aaaggcatcctaagcgggaaataggacgaaactccttcaaaatgaaaggatttttaatctttgggattaaagtaacaaaataggacaaaaaactcctcgg 38968906  T
Q  118 caccacctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatccagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||    
T  38968905 caccacctcattaccatggaattgatcaaacataattctcacttcatgcttgattagatacaaaaattctttaataaaagtgaaattaaaaccatccggg 38968806  T
Q  218 tccgagctcttgttaccatggctatctttgactacctt 255  Q
     | | ||  |||||||||| ||||||||||||||||||    
T  38968805 gctgggcagttgttaccatcgctatctttgactacctt 38968768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 16078419 - 16078252
Alignment:
Q  29 aagagggaaataggacgaaactccttcaaagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcat 128  Q
    ||||| |||||||| || |||||||||||||| || || ||    | ||||||||| || ||||||||||| |  |  |||||||| ||||  || ||||    
T  16078419 aagagtgaaataggtcggaactccttcaaagtaaatgggttacgcatctttgggatcaatgtaacaaaatacggtaggaaactcctaggcaaaacttcat 16078320  T
Q  129 taccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaa 196  Q
    |  |||| |||||||||||||| ||||| |||||||  || || |||||||||||||| |||||||||    
T  16078319 tttcatgaaattgatcaaacatgattctaacttcatttttaataagataccaaaattccttaataaaa 16078252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 33483140 - 33483062
Alignment:
Q  132 catggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaacc 210  Q
    ||||||||||||||||||||   ||||| |||| |||||| | |||| ||||||| ||||| |||||||||||||||||    
T  33483140 catggaattgatcaaacatatccctcacctcattcttgatcaaatactaaaattccttaatgaaagcgaaattaaaacc 33483062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 44691018 - 44690923
Alignment:
Q  119 accacctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatcc 214  Q
    |||||||||||| ||| ||||||||| ||||| || || || |||| |||||| | |||||||||||||||||  || || |||||||| ||||||    
T  44691018 accacctcattagcatagaattgatcgaacattatcctaacctcatccttgatcaaataccaaaattctttaaagaaggcaaaattaaagccatcc 44690923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 6230143 - 6229938
Alignment:
Q  23 catcctaagagggaaataggacgaaactccttcaaagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcggcacca 122  Q
    |||||||| |||||||| |||||||||||||||||||| |||||||| || |||||||| || | ||||||||| |||||||| |||||| |||||||||    
T  6230143 catcctaaaagggaaatcggacgaaactccttcaaagtaaaaggattgttgacctttggtataagagtaacaaagtaggacaaaaaactcttcggcacca 6230044  T
Q  123 cctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatccaggtccga 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  ||||| ||||||||||||||| || |||     
T  6230043 cctcattaccatggaattgatcaaacataattctcacttcatgcttaattagataccaaaattctttcaagaaagcaaaattaaaaccatccgggcccgg 6229944  T
Q  223 gctctt 228  Q
    ||||||    
T  6229943 gctctt 6229938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 12829332 - 12829427
Alignment:
Q  123 cctcattaccatggaattgatcaaacata----attctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatcc 214  Q
    ||||||| ||||| |||||||||||||||    || | ||| |||| |||||||| |||||||||||| || | |||| | |||||||||||||||    
T  12829332 cctcattcccatgaaattgatcaaacatatataatccgcacctcatccttgattaaataccaaaattccttcacaaaaccaaaattaaaaccatcc 12829427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 55351495 - 55351258
Alignment:
Q  18 aaaggcatcctaagagggaaataggacgaaactccttcaaagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcgg 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||||||| |    
T  55351495 aaaggcaccctaagagggaaataggacgaaactccttcaaagtgaaaggattgtttaccttagggattaaagtaacaaaataagacaaaaaactcctcag 55351396  T
Q  118 caccacctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatccagg 217  Q
    || |  ||||||  ||| |||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||| |||||| |     
T  55351395 caacttctcattcgcatagaattggtcaaacataattctcacttcatgcttgataaggtgccaaaattctttaataaaagcaaaattaaatccatccgga 55351296  T
Q  218 tccgagctcttgttaccatggctatctttgactacctt 255  Q
     ||| ||| || |||||||  ||||||||||| |||||    
T  55351295 cccgggcttttattaccatcactatctttgacaacctt 55351258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 47551280 - 47551364
Alignment:
Q  132 catggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatccag 216  Q
    ||||||||||||| |||||||||||||| |||| ||| || | ||||||||||   || || ||||| |||||||||||||||||    
T  47551280 catggaattgatcgaacataattctcacctcatccttcatcaaataccaaaatctcttgatgaaagcaaaattaaaaccatccag 47551364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 8506535 - 8506625
Alignment:
Q  124 ctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatcc 214  Q
    ||||||| |||||||||| || |||||||||||||| |||| |||||| |  ||||||||||| || | ||||||| | ||| ||||||||    
T  8506535 ctcattagcatggaattggtcgaacataattctcacctcatccttgatcaagtaccaaaattccttcacaaaagcgtagttataaccatcc 8506625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 29081055 - 29080975
Alignment:
Q  76 ctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattct 156  Q
    ||||||||||||||  |||||||| | |||||||||  | || |||||||||||| |||| |||||||| ||||| |||||    
T  29081055 ctttgggattaaagccacaaaatatgccaacaaactttttggtaccacctcattagcatgaaattgatcgaacattattct 29080975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 13852320 - 13852276
Alignment:
Q  121 cacctcattaccatggaattgatcaaacataattctcacttcatg 165  Q
    |||||||||| |||| |||||||||||||| ||||| ||||||||    
T  13852320 cacctcattagcatgaaattgatcaaacatgattcttacttcatg 13852276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 3680390 - 3680627
Alignment:
Q  18 aaaggcatcctaagagggaaataggacgaaactccttcaaagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcgg 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||| || ||||||||||||||||||||||| || || ||||||||    
T  3680390 aaaggcatcctaaaagggaaataggacgaaactccttcaaagtaaacggattattaactttagggattaaagtaacaaaataggataaaaagctcctcgg 3680489  T
Q  118 caccacctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatccagg 217  Q
     ||||||||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||| |||||||| || || || |||||||||| | |     
T  3680490 aaccacctcattaccatggaattggtcaaacataattctcatttcgtgcttgataagataccaaaactctttaatgaacgcaaagttaaaaccattcgga 3680589  T
Q  218 tccgagctcttgttaccatggctatctttgactacctt 255  Q
     |||  |||||||||||||  || |||||||| |||||    
T  3680590 cccggactcttgttaccatcactctctttgacaacctt 3680627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 29299714 - 29299552
Alignment:
Q  74 acctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattctcacttcatgcttgatta 173  Q
    ||||||||||| ||||  |||||||| |  || ||||| || ||||||||||||||| |||| ||||||||||||||||| ||||| |||| ||| ||||    
T  29299714 acctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcatta 29299615  T
Q  174 gataccaaaattctttaataaaagcgaaattaaaaccatccaggtccgagctcttgttaccat 236  Q
      ||||||||   ||||| ||| || ||||||||||||||| | ||||| || || |||||||    
T  29299614 agtaccaaaaccttttaaaaaaggcaaaattaaaaccatccggttccgaacttttattaccat 29299552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 15194927 - 15194991
Alignment:
Q  91 aacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattc 155  Q
    ||||||||| | ||||||||||||||| ||||| |||||| |||| ||||| || ||||||||||    
T  15194927 aacaaaatatgccaacaaactcctcgggaccacttcattagcatgaaattggtcgaacataattc 15194991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 16648533 - 16648482
Alignment:
Q  132 catggaattgatcaaacataattctcacttcatgcttgattagataccaaaa 183  Q
    |||||||||||||||||||||| |||||||||| ||| || | |||||||||    
T  16648533 catggaattgatcaaacataatcctcacttcattctttatcaaataccaaaa 16648482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 44682432 - 44682241
Alignment:
Q  23 catcctaagagggaaataggacgaaactccttcaaagtgaaaggatttttaacctttgggattaaagtaacaaaataggacaacaaactcctcggcacca 122  Q
    |||||||||||||| || ||| || |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  44682432 catcctaagagggatatgggatgatactccttcaaagtgaaaggattattgacctttggaattaaagtaacaaaataggacaagaaactcctcggcacca 44682333  T
Q  123 cctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatcc 214  Q
    |||||||  |||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||| || ||||| || ||||||||||||    
T  44682332 cctcatttgcatgaaattgatcaaacatgattctcacatcatgcttgataagataccaaaattctttgatgaaagcaaagttaaaaccatcc 44682241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 25659887 - 25659758
Alignment:
Q  83 attaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaa 182  Q
    |||||||| |||||||| | ||||| ||  ||||||| |||||||||| |||| ||||| ||||||| ||||||||||||||  || |||| ||||||||    
T  25659887 attaaagtcacaaaataagccaacatacctctcggcaacacctcattagcatgaaattggtcaaacaaaattctcacttcatctttaattaaataccaaa 25659788  T
Q  183 attctttaataaaagcgaaattaaaaccat 212  Q
     || ||| | |||||| |||||||| ||||    
T  25659787 tttttttgacaaaagcaaaattaaacccat 25659758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 29577065 - 29577118
Alignment:
Q  103 caacaaactcctcggcaccacctcattaccatggaattgatcaaacataattct 156  Q
    |||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||    
T  29577065 caacaaactcttcggcacaacctcattagcatggaattgatgaaacataattct 29577118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 4901754 - 4901640
Alignment:
Q  122 acctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatccaggtccg 221  Q
    ||||||||| | || |||||||||||||||||||| ||||||| ||| || | ||||||||| |  || | ||| || || ||||||||||| ||  |||    
T  4901754 acctcattagcgtgaaattgatcaaacataattctaacttcatcctttatcaaataccaaaaattcttcacaaacgcaaagttaaaaccatcgagacccg 4901655  T
Q  222 agctcttgttaccat 236  Q
     ||||||||| ||||    
T  4901654 ggctcttgttcccat 4901640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 23295255 - 23295395
Alignment:
Q  74 acctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattctcacttcatgcttgatta 173  Q
    |||||||| || || || ||||| || |||||||||||||| || | ||| ||||||||||||||||||||||| | ||||||||| |||| ||| || |    
T  23295255 acctttggaatcaacgtcacaaagtaagacaacaaactcctagggaacacttcattaccatggaattgatcaaagaaaattctcacctcattcttaatga 23295354  T
Q  174 gataccaaaattctttaataaaagcgaaattaaaaccatcc 214  Q
    ||||||||||||  ||||  ||||| |||||||||||||||    
T  23295355 gataccaaaatttcttaaagaaagcaaaattaaaaccatcc 23295395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 43458168 - 43458078
Alignment:
Q  127 attaccatggaattgatcaaacataattc-tcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatccagg 217  Q
    ||||||||| ||||||||||| |||| || |||| |||||||| || |||||||||||||  ||||||||||| |||||||| |||||||||    
T  43458168 attaccatgaaattgatcaaa-ataaatcatcacctcatgcttaataagataccaaaattgcttaataaaagcaaaattaaatccatccagg 43458078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 40197970 - 40198055
Alignment:
Q  122 acctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaa 207  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||  ||||| |  ||||||||||| || | |||||| ||||||||    
T  40197970 acctcattaccatgaaattggtcaaacataattctcacctcatctttgatcaagtaccaaaattccttcacaaaagcaaaattaaa 40198055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 40388080 - 40388169
Alignment:
Q  125 tcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatcc 214  Q
    |||||| |||| |||||||| ||||||||||| || ||||  || || |  |||||||||||||| ||||| ||||||||||||||||||    
T  40388080 tcattagcatgaaattgatcgaacataattctaacctcatcttttatcaagtaccaaaattctttgataaatgcgaaattaaaaccatcc 40388169  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 48721436 - 48721356
Alignment:
Q  76 ctttgggattaaagtaacaaaataggacaacaaactcctcggcaccacctcattaccatggaattgatcaaacataattct 156  Q
    |||||| |||||||  ||||| || | |||||| ||  ||||||||||||||||| |||| ||||||||||||||||||||    
T  48721436 ctttggaattaaagccacaaagtatgccaacaagcttttcggcaccacctcattagcatgaaattgatcaaacataattct 48721356  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 49454731 - 49454620
Alignment:
Q  103 caacaaactcctcggcaccacctcattaccatggaattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaa 202  Q
    |||||||||  ||||||  ||||||||| |||  |||||||| ||||| ||||| || ||||  || || |  ||||||||||||||||||||||| |||    
T  49454731 caacaaacttttcggcaagacctcattagcataaaattgatcgaacatgattctaacctcatcttttatcaagtaccaaaattctttaataaaagcaaaa 49454632  T
Q  203 ttaaaaccatcc 214  Q
    |||||| |||||    
T  49454631 ttaaaagcatcc 49454620  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 9295913 - 9295836
Alignment:
Q  137 aattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatcc 214  Q
    ||||||||||||| ||| |||||  ||| ||| || ||||||||||| || ||||| ||||| |||||||||||||||    
T  9295913 aattgatcaaacacaatcctcaccccatccttcataagataccaaaactccttaattaaagcaaaattaaaaccatcc 9295836  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 17776514 - 17776456
Alignment:
Q  156 tcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatcc 214  Q
    |||| |||| |||||| |||||||||||||  |||||||| || |||||||||||||||    
T  17776514 tcacctcatacttgataagataccaaaattgcttaataaatgcaaaattaaaaccatcc 17776456  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 9288969 - 9288892
Alignment:
Q  137 aattgatcaaacataattctcacttcatgcttgattagataccaaaattctttaataaaagcgaaattaaaaccatcc 214  Q
    ||||||||||||||||| ||||   ||| ||| || ||||||||||| || ||||| ||||| |||||||||| ||||    
T  9288969 aattgatcaaacataatcctcatcccatccttcataagataccaaaactccttaatgaaagcaaaattaaaacaatcc 9288892  T

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