View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10800_high_1 (Length: 337)
Name: NF10800_high_1
Description: NF10800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10800_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 40569031 - 40569338
Alignment:
| Q |
17 |
agtggcaatggaattagagggagtattagttagtgaagagcgtcgttggggaagcgacaatttatcttcagaagagactgaaaagttgcttaaaacagca |
116 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40569031 |
agtggcaatggaattagagggaatattagttagtgaagagcgtcgttggggaagcgacaatttatcttcagaagagactgaaaagttgcttaaaacagca |
40569130 |
T |
|
| Q |
117 |
cggtccattaaaaacgttgaagatgttgttggtggaagtggcattaattcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40569131 |
cggtccattaaaaacgttgaagatgttgttggtggaagtggcattaattcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaa |
40569230 |
T |
|
| Q |
217 |
gatgattagttgatattagtattcaggattagatgttaatctatcttcattataatagtgttgtcgtatatgttctatttccccctgtattggtctattg |
316 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
40569231 |
gatgattggttgatattagtattcaggattagatgtgaatctatcttcattataatagtgttgtcgtatatgttgtattttcccctgtattggtctattg |
40569330 |
T |
|
| Q |
317 |
tacatgat |
324 |
Q |
| |
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||||||| |
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| T |
40569331 |
cacatgat |
40569338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 40573632 - 40573939
Alignment:
| Q |
17 |
agtggcaatggaattagagggagtattagttagtgaagagcgtcgttggggaagcgacaatttatcttcagaagagactgaaaagttgcttaaaacagca |
116 |
Q |
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||||||||||||| | |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
40573632 |
agtggcaatggaacttgagggaatattagttgttgaagagcgacgttggggaagcgacaatttatcttcagaagaggctgaaaacttgcttaaaacagca |
40573731 |
T |
|
| Q |
117 |
cggtccattaaaaacgttgaagatgttgttggtggaagtggcattaattcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaa |
216 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40573732 |
cggtctattaaaaacattgaagatgtcgttggtggaagtggcattaattcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaa |
40573831 |
T |
|
| Q |
217 |
gatgattagttgatattagtattcaggattagatgttaatctatcttcattataatagtgttgtcgtatatgttctatttccccctgtattggtctattg |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| ||| |||| |
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| T |
40573832 |
gatgattagttgatattaatattcaggattagatgttaatatatcttcagtataatagtgttgtcgtatatgttgtatttccccctgtattagtccattg |
40573931 |
T |
|
| Q |
317 |
tacatgat |
324 |
Q |
| |
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||||||| |
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|
| T |
40573932 |
gacatgat |
40573939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 40580089 - 40580357
Alignment:
| Q |
17 |
agtggcaatggaattagagggagtattagttagtgaagagcgtcgttggggaagcgacaatttatcttcagaagagactgaaaagttgcttaaaacagca |
116 |
Q |
| |
|
||||||||||||| | |||||| ||||||||| ||||||| ||||||||||| ||| |||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
40580089 |
agtggcaatggaacttgagggaatattagttattgaagagttccgttggggaagtgactatttgtcttcagaagagactgaaaacttgctcaaaacagca |
40580188 |
T |
|
| Q |
117 |
cggtccattaaaaacgttgaagatgttgttggtggaagtggcattaattcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaa |
216 |
Q |
| |
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||| | ||||| ||| |||||| | |||||||||||| ||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
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| T |
40580189 |
gaatccgtaaaaaatgttcaagatggtattggtggaagtgatattaattcttctggttcatatagcttaaaccagatttcgat---atcgattggtggaa |
40580285 |
T |
|
| Q |
217 |
gatgattagttgatat---tagtattcaggattagatgttaatctatcttcattataatagtgttgtcgtat |
285 |
Q |
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||||||| | ||||| || || ||| | ||| ||||||||||||||||| |||||| ||||||| |||| |
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|
| T |
40580286 |
gatgattgatggatattaataatactcatggttatatgttaatctatcttcactataattgtgttgtagtat |
40580357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 40602698 - 40602775
Alignment:
| Q |
154 |
gtggcattaattcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttgata |
231 |
Q |
| |
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|||||||| ||||||| | |||| ||||||||| |||||| ||| |||||||||||||||| |||||||||||||| |
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| T |
40602698 |
gtggcattcattcttccaactcatgtagcttaaagcagattaggatatcattgattggtggaatatgattagttgata |
40602775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 40582217 - 40582288
Alignment:
| Q |
145 |
ttggtggaagtggcattaattcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaa |
216 |
Q |
| |
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|||| |||||||| |||||||||||||| || ||||| || |||| ||||| ||||||||||||||||||| |
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| T |
40582217 |
ttggcggaagtggaattaattcttctgattctgatagcatataccaaatttcaatgtcattgattggtggaa |
40582288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 2014571 - 2014505
Alignment:
| Q |
163 |
attcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttga |
229 |
Q |
| |
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|||||||||||||||| ||| ||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
2014571 |
attcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttga |
2014505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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