View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10800_low_6 (Length: 238)
Name: NF10800_low_6
Description: NF10800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10800_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 42142963 - 42143165
Alignment:
| Q |
18 |
agagaaaccatagaagtattaacagacaattttcacttgagacaggattttctgttctcaacagagaaagaaaagggaaagatgatagaaaggttttgac |
117 |
Q |
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| T |
42142963 |
agagaaaccatagaagtattaacagacaattttcacttgagacaggattttctgttctcaacagagaaagaaaagggaaagatgatagaaaggttttgac |
42143062 |
T |
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| Q |
118 |
aagaagtggaaccagcttaggaggggcaaataggtttggtttggaaggacataaaagagatttcagtatcttcaagacgaaatctactcttagtaagcag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42143063 |
aagaagtggaaccagcttaggaggggcaaataggtttggtttggaaggacataaaagagatttcagtatcttcaagacgaaatctactcttagtaagcag |
42143162 |
T |
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| Q |
218 |
aat |
220 |
Q |
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||| |
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| T |
42143163 |
aat |
42143165 |
T |
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