View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10801_high_2 (Length: 241)
Name: NF10801_high_2
Description: NF10801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10801_high_2 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 12196766 - 12196892
Alignment:
| Q |
114 |
tgtgccactttaaattttcggttaaatttctagctgagatatctcatagaataaaatcatactgtgttcacctgctcctgaaaccttttggtctgtccc- |
212 |
Q |
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| T |
12196766 |
tgtgcaactttaaattttcggttaaatttctagttga--tatctcatagaataaaatcatactgtgttcacctgctcctgaaaccttttggtctgtccct |
12196863 |
T |
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| Q |
213 |
tatatggttatgtaaagcgccactctgag |
241 |
Q |
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| T |
12196864 |
tatatgcttatgtaaagggccactctgag |
12196892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 12441194 - 12441320
Alignment:
| Q |
114 |
tgtgccactttaaattttcggttaaatttctagctgagatatctcatagaataaaatcatactgtgttcacctgctcctgaaaccttttggtctgtccc- |
212 |
Q |
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| T |
12441194 |
tgtgcaactttaaattttcggttaaatttctagttga--tatctcatagaataaaatcatactgtgttcacctgctcctgaaaccttttggtctgtccct |
12441291 |
T |
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| Q |
213 |
tatatggttatgtaaagcgccactctgag |
241 |
Q |
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| T |
12441292 |
tatatgcttatgtaaagggccactctgag |
12441320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 12196723 - 12196768
Alignment:
| Q |
18 |
cagacaatatgtattcttcacctgtctttgccattcccactaatgt |
63 |
Q |
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| T |
12196723 |
cagacaatatgtattcttcaactgcctttgccattcccacaaatgt |
12196768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 12441151 - 12441196
Alignment:
| Q |
18 |
cagacaatatgtattcttcacctgtctttgccattcccactaatgt |
63 |
Q |
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| T |
12441151 |
cagacaatatgtattcttcaactgcctttgccattcccacaaatgt |
12441196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 19765231 - 19765318
Alignment:
| Q |
152 |
atatctcatagaataaaatcatactgtgttcacctgctcctgaaaccttttggtctgtccc-tatatggttatgtaaagcgccactct |
238 |
Q |
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| T |
19765231 |
atatatcatagaataaaagcatactgtgctcacctgctcctgaaaccttttggtctgtcccttatatgcttatgtaaagtgccactct |
19765318 |
T |
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