View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10801_low_1 (Length: 547)
Name: NF10801_low_1
Description: NF10801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10801_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 627054 - 627591
Alignment:
| Q |
1 |
accaaaaactataacgaactaatgacttgaactatcaaaacatcaggacaccactaactatctcgtgtagttctgatctcttaacagtccttgtcattag |
100 |
Q |
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| T |
627054 |
accaaaaactataacgaactaatgacttgaactatcaaaacatcaggacaccacttactatctcgtgtagttctgatctcttaatagtccttgtcattag |
627153 |
T |
|
| Q |
101 |
tccgttattgtttctggtgctcgaaaaattcctcgtcaatttgaaaagaaatgaagaaggattattatctcatatgatcctataattaaatgaatatgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
627154 |
tccgttattgtttctggtgctcgaaaaattcctcgacaatttgaaaagaaatgaagaaggattaacatctcatatgatcctataattaaatgaagatgag |
627253 |
T |
|
| Q |
201 |
aattgatgacctttttctccggctgcaccggcgtggagaccggcactgacgtgtccttagaagatgaagatgacttgaaaactttcttgacagaagagaa |
300 |
Q |
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| T |
627254 |
aattgatgacctttttctccggctgcaccggcgtggagaccggcactgacgtgtccttagaagatgaagaagacttgaaaactttcttgacagaagagaa |
627353 |
T |
|
| Q |
301 |
ccaacttcctccttttcttcccatcagcaactgaaggattattgcaatatcaaaaaccttataataactaattaactaaaactatgacataaata----- |
395 |
Q |
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| T |
627354 |
ccaacttcctccttttcttcccatcagcaactgaaggattattacaatatcaaaaaccttataataacaaattaactaaaactatgacataaatatatat |
627453 |
T |
|
| Q |
396 |
-tatgtatgcatgtactaattaaggtacaatacaaacctgatgagagaaatgttactgcttaatttggatataacttcacaacatattgtgcatggagtt |
494 |
Q |
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| T |
627454 |
gtatgtatgcatgtactaattaaggtacaatacaaacctgatgagagaaatgttactgcttaatttggatataacttcacaacatattgtgcatggagtt |
627553 |
T |
|
| Q |
495 |
tttgagattgatagaaaaggttattgtggatgaagaat |
532 |
Q |
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| T |
627554 |
tttgagattgatagaaaaggttattgtggatgaagaat |
627591 |
T |
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Back To:
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 41669913 - 41669864
Alignment:
| Q |
266 |
gaagatgacttgaaaactttcttgacagaagagaaccaacttcctccttt |
315 |
Q |
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| T |
41669913 |
gaagaagacttgaaaactttcttcacagatgagaaccaactgcttccttt |
41669864 |
T |
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