View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10801_low_10 (Length: 265)
Name: NF10801_low_10
Description: NF10801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10801_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 26666491 - 26666728
Alignment:
| Q |
18 |
aaaagtgtggttcaatatctgaagtatcactgccacatcttgtctttatgtttaaattgtgtaatattgttaaaaaatatatgttacaatactgtgacag |
117 |
Q |
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| T |
26666491 |
aaaagtgtggttcaatatgtgaagtatcactgccacatcttgtctttatgtttaaattgtgtaatattgtaaaaaaaaatatgttacaatactgtgacag |
26666590 |
T |
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| Q |
118 |
aatattggttttatgtttttcatacacaagctcaaaagtagaccattgcagaacatgatgtagaagtagtgactaaggatgactctgagatttgtatttg |
217 |
Q |
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| T |
26666591 |
aatattggttttatgtttttcatacacaagctcaaaagtagaccattgcagaacatgatgtagaagtagtgactaaggatgactctgagatttgtatttg |
26666690 |
T |
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| Q |
218 |
gttgatgaggtaagagtggtgacattctctgttctctg |
255 |
Q |
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| T |
26666691 |
gttgatgaggtaagagtggtgacattctctgttttctg |
26666728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 29301079 - 29301126
Alignment:
| Q |
91 |
aaaatatatgttacaatactgtgacagaatattggttttatgtttttc |
138 |
Q |
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| T |
29301079 |
aaaatatatgttacaatactgtgacagaatatttgttttctgtttttc |
29301126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 29307741 - 29307788
Alignment:
| Q |
91 |
aaaatatatgttacaatactgtgacagaatattggttttatgtttttc |
138 |
Q |
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| T |
29307741 |
aaaatatatgttacaatgctgtgacagaatattggttttctgtttttc |
29307788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 29307934 - 29307975
Alignment:
| Q |
135 |
tttcatacacaagctcaaaagtagaccattgcagaacatgat |
176 |
Q |
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| T |
29307934 |
tttcatacacaagctcaaaagtagaccattgcagaatatgat |
29307975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 29301274 - 29301311
Alignment:
| Q |
139 |
atacacaagctcaaaagtagaccattgcagaacatgat |
176 |
Q |
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| T |
29301274 |
atacacaagctcaaaagtagaccattgcagaatatgat |
29301311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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