View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10801_low_2 (Length: 448)
Name: NF10801_low_2
Description: NF10801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10801_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 46157967 - 46157542
Alignment:
| Q |
18 |
gttgaggaatgggagagtgtgtacgagaaatgccctgggactaaaaatgtggctggtagtgtaggaatcattgtgagagacccatcaaagccacctccca |
117 |
Q |
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| T |
46157967 |
gttgaggaatgggagagtgtgtacgagaaatgccctgggactaaaaatgtggctggtagtgtaggaatcattgtgagagatccatcaaagccacctccta |
46157868 |
T |
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| Q |
118 |
agtttaaactggttgcaagactagggaagctagagattgatcaagaagaagttggaaccgatcctaatgggacagaatttgtcattgcaacaaaggattc |
217 |
Q |
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| T |
46157867 |
agtttaaactggttgcaagactagggaagctagagattgatcaagaagaagttggaaccgatcctaatgggacagaatttgtcattgcaacaaaggattc |
46157768 |
T |
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| Q |
218 |
gccagaactagatgcttcaactctggtaattggaagggtggtaggaggaatggagtttgtacagaagattagtcaggtaaaaactgtacaagagaacacg |
317 |
Q |
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| T |
46157767 |
gccagaactagatgcttcaactctggtaattggaagggtggtaggaggaatggagtttgtacagaagattagtcaggtaaaaactgtacaagagaacacg |
46157668 |
T |
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| Q |
318 |
agctctccatattttaggtgagtataacacaagaatttgctgccattttagtcaaagaagatatttttatgcccaacatgataagtttgaaacaattatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46157667 |
agctctccatattttaggtgagtataacacaagaatttgctgccattttagtcaaagaagatatttttatgcccaacatgataagtttgaaacaattatt |
46157568 |
T |
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| Q |
418 |
gagatctttctttgttctctgcttct |
443 |
Q |
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| T |
46157567 |
gagatctttctctgttttctgcttct |
46157542 |
T |
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