View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10801_low_3 (Length: 396)
Name: NF10801_low_3
Description: NF10801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10801_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 247 - 386
Target Start/End: Original strand, 9139531 - 9139670
Alignment:
| Q |
247 |
aaactattactactgagttgacaacataaaattagtatttacttgttaacacatttttatttcataattatgttcaggtgctgaggtgaaagtagattgc |
346 |
Q |
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| T |
9139531 |
aaactattaccaccgagttgacaacatagaattagtatttacttgttaacacatttttatttcataattatgttcaggtgctgaggtgaaagtagattgc |
9139630 |
T |
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| Q |
347 |
atgttcaaagcaatttcagccaaaaccacagagcagatta |
386 |
Q |
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| T |
9139631 |
atgttcaaagcaatttcagccaaaacaacagagcagatta |
9139670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 9139165 - 9139228
Alignment:
| Q |
2 |
aattatttctaaagcgatttaaaaaattacaaagtcaaactcttattagtcagtagaaacctcg |
65 |
Q |
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| T |
9139165 |
aattatttctattgcgatttaaaaaattataaagtcaaactcttatcagtcaacagaaacctcg |
9139228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 9139369 - 9139446
Alignment:
| Q |
180 |
aactatattatatcgtgtatattacagtgatattaatagtcattttacaaccatttctacgaaagttaaactattactactg |
261 |
Q |
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| T |
9139369 |
aactatattatat--tgtaaattacagtgatat--atattcattttatgaccatttctacgaaatctaaactattaccactg |
9139446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 9139296 - 9139336
Alignment:
| Q |
143 |
aaagtcaaactcttattcttgaaaagggtacatcattaact |
183 |
Q |
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| T |
9139296 |
aaagtcatactcttattcgtgaaaaggttacatcattaact |
9139336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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