View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10801_low_5 (Length: 353)
Name: NF10801_low_5
Description: NF10801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10801_low_5 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 23638 - 23317
Alignment:
| Q |
20 |
caagcttcaacagtttgcaaactatggtacaccatactctcatcatcttccttttcttcaaaccataaccaaaaacacaaaccatggttctttctgcatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23638 |
caagcttcaacagtttgcaaactatggtacaccatactctcatcatcttccttttcttcaaaccataaccaaaaacacaaaccatggttctttctgcatg |
23539 |
T |
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| Q |
120 |
gtatccataacatatcttccaaaaacaatcaatcttttgcctttgacccttcttctaactcttggttccttcttccaacacctcaacaacctcttcacta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23538 |
gtatccataacatatcttccaaaaacaatcaatcttttgcctttgacccttcttctaactcttggttccttcttccaacacctcaacaacctcttcacta |
23439 |
T |
|
| Q |
220 |
tcctaacaacacttcttttattggtacttcatcttacttcttcatcacggcacctaactttgtctatacttcaattctacgtcctcttgcttggagttct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23438 |
tcctaacaacacttcttttattggtacttcatcttacttcttcatcacggcacctaactttgtctatacttcaattctacgtcctcttgcttggagttct |
23339 |
T |
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| Q |
320 |
actccacctcttcattttccta |
341 |
Q |
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|||||||||||||||||||||| |
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| T |
23338 |
actccacctcttcattttccta |
23317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 21310023 - 21309702
Alignment:
| Q |
20 |
caagcttcaacagtttgcaaactatggtacaccatactctcatcatcttccttttcttcaaaccataaccaaaaacacaaaccatggttctttctgcatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21310023 |
caagcttcaacagtttgcaaactatggtacaccatactctcatcatcttccttttcttcaaaccataaccaaaaacacaaaccatggttctttctgcatg |
21309924 |
T |
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| Q |
120 |
gtatccataacatatcttccaaaaacaatcaatcttttgcctttgacccttcttctaactcttggttccttcttccaacacctcaacaacctcttcacta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21309923 |
gtatccataacatatcttccaaaaacaatcaatcttttgcctttgacccttcttctaactcttggttccttcttccaacacctcaacaacctcttcacta |
21309824 |
T |
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| Q |
220 |
tcctaacaacacttcttttattggtacttcatcttacttcttcatcacggcacctaactttgtctatacttcaattctacgtcctcttgcttggagttct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21309823 |
tcctaacaacacttcttttattggtacttcatcttacttcttcatcacggcacctaactttgtctatacttcaattctgcgtcctcttgcttggagttct |
21309724 |
T |
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| Q |
320 |
actccacctcttcattttccta |
341 |
Q |
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|||||||||||||||||||||| |
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| T |
21309723 |
actccacctcttcattttccta |
21309702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 4459808 - 4459868
Alignment:
| Q |
24 |
cttcaacagtttgcaaactatggtacaccatactctcatcatcttccttttcttcaaacca |
84 |
Q |
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||||||||| ||||||||||||||| |||||| | ||||||||||| |||||||||||||| |
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| T |
4459808 |
cttcaacagattgcaaactatggtaaaccataatttcatcatcttcattttcttcaaacca |
4459868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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