View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10801_low_6 (Length: 294)
Name: NF10801_low_6
Description: NF10801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10801_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 6359323 - 6359058
Alignment:
| Q |
13 |
aagggattaggttattggatcgagatttctgtaaagcttgaaggtatcaaacaatatatttaataacgaaataataacagtagtagatagagagaattac |
112 |
Q |
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| T |
6359323 |
aagggattaggttattggatcgagatttctgtaatgcttgaaggtatcaaacaatatatttaataacgaaataataacagtagtaaatagagagaattac |
6359224 |
T |
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| Q |
113 |
aaggacgagcttaaattcaaaatgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatggatatagcttcttgataatctgca |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359223 |
aaggacgagcttaaattcaaaacgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatggatatagcttcttgataatctgca |
6359124 |
T |
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| Q |
213 |
tatactcaaggatctgacttcatcgacataaactgtaaatcaatttcatttgtacatggatcaaag |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359123 |
tatactcaaggatctgacttcatcgacataaactgtaaatcaatttcatttgtacatggatcaaag |
6359058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 160 - 268
Target Start/End: Original strand, 32857285 - 32857393
Alignment:
| Q |
160 |
tttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatactcaaggatctgacttcatcgacataaactgtaaatcaatttc |
259 |
Q |
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||||||||||||||||| |||||| ||||| |||||||| ||| ||||| |||||| |||||||| ||||||||| || |||||| | ||||||||||| |
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| T |
32857285 |
tttgcagtttctcaatcattttatggatggaaatagcttcatgagaatctacatatagtcaaggatttgacttcatggatataaacagcaaatcaatttc |
32857384 |
T |
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| Q |
260 |
atttgtaca |
268 |
Q |
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||||||||| |
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| T |
32857385 |
atttgtaca |
32857393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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