View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10801_low_8 (Length: 286)
Name: NF10801_low_8
Description: NF10801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10801_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 276
Target Start/End: Complemental strand, 36636552 - 36636276
Alignment:
| Q |
5 |
tgtttgaattccatattcatatcacatacgctaactattgaaggtgaaaaaccatacattnnnnnnngatgtcccaac----atatcaaatgttccggtc |
100 |
Q |
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| T |
36636552 |
tgtttgaattccatattcatatcacatatgctaactattgagggtgaaaaactgtacattaaaaaaagatgtcccaacatatatatcaaatgtttcggtc |
36636453 |
T |
|
| Q |
101 |
gtctaaattatactta-agaactatgtgttgttaccttactaacatgttctatcctaagctttaatatcaatagaatgtaagaatttcaatatcaagtgg |
199 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36636452 |
gtctaaattatagttagggaactatgtgttgttaccttactaacatgttctatcctaagctttaatatcaatagaatgtaagaatttcaatatcaagtgg |
36636353 |
T |
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| Q |
200 |
gatagtatatacttacttgagaacaaattgtgttccacacttcctctggccatgtactcatatattagcaccctatg |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36636352 |
gatagtatatacttacttgagaacaaattgtgttccacacttcctctggccatgtactcatatattagcaccctatg |
36636276 |
T |
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