View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10802_high_3 (Length: 407)
Name: NF10802_high_3
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 48372469 - 48372856
Alignment:
| Q |
7 |
cgttgtatgactcgcatgagttggtctcgattgtttatacaatcgagaggcaaatgatgttgtggccgagttatgatgggctaaaacagccaatcataac |
106 |
Q |
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| T |
48372469 |
cgttgtatgactcgcatgagttggtctcgattgtttatacaatcgagaggcaaatgatgttgtggccgagttatgatgggctaaaacggccaatcataac |
48372568 |
T |
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| Q |
107 |
ccagttcatcgatacagagaaagaaacttcaatccgacatgtttcgaaatgttcttctgtggtaacaagttctagtgaaactttcacgacgaacatgtgg |
206 |
Q |
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| T |
48372569 |
ccagttcatggatacagagaaagaaacttcaatccgacatgtttcgaaatgttcttctgtggtaacaagttctagtgaaactttcacgacgaacatgtgg |
48372668 |
T |
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| Q |
207 |
ctgaagaagttgactagccaagggatcaagaagaagcacnnnnnnntgaaaggtcgcttttttagattggtttgcggatgaaacatgttttagtcactta |
306 |
Q |
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| T |
48372669 |
ctgaagaagttgactagccaagggatcaagaagaagcacagaaaaatgaaaggtcgcttttttagattggtttgcggatgaaacatgttttagtcactta |
48372768 |
T |
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| Q |
307 |
tgtgattttgatctctgtctttgaaattgttactatccaatnnnnnnnntcaataaactatacacacattaataattgatctctgtct |
394 |
Q |
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| T |
48372769 |
tgtgattttgatctctgtctttgaaattgttactatccaataaaagaaatcaataaactatacacacattaataattgatctctgtct |
48372856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 48381482 - 48381559
Alignment:
| Q |
168 |
gtaacaagttctagtgaaactttcacgacgaacatgtggctgaagaagttgactagccaagggatcaagaagaagcac |
245 |
Q |
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| T |
48381482 |
gtaacaagttctagtgaaactttcccgacgaacatgtggctgaagaagtcgactagccaagggatcaagaagaagcac |
48381559 |
T |
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